Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq8 109 4e-19 seq6 104 2e-17 seq1 104 2e-17 seq5 86.0 4e-12 >seq8 Length=74329289 Score = 109 bits (120), Expect = 4e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || ||||| || || || ||||||||| | |||||||| | | Sbjct 36266508 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACTTTGGAAGTTGAGAGCTC 36266567 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | ||| | |||| || ||||| ||||| | || ||||||| Sbjct 36266568 CGACACCATTGACAATGTCAAAGCCAAAA-TTCAGGACAAGGAAGGCATTCCCCCAGATC 36266626 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | | || ||||| || |||||||| || || | | ||||| | ||||||| Sbjct 36266627 AGCAAAGGCTTATCTTTGCTGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTACA 36266686 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || |||||||| Sbjct 36266687 ACATCCAGAAGGAGTCCAC 36266705 Score = 102 bits (112), Expect = 6e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || || || || ||| | |||||||| | || Sbjct 36266737 ATGCAGATTTTTGTCAAGACCCTTACTGGGAAGACCATAACTTTGGAAGTTGAGAGCTCG 36266796 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| | || || ||||||||||| | || |||||||| Sbjct 36266797 GATACCATTGATAATGTCAAAGC-TAAGATACAGGACAAAGAAGGCATTCCCCCAGATCA 36266855 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || ||||| || ||||| || || | || || | | |||||||| Sbjct 36266856 GCAGAGGTTGATTTTCGCCGGGAAGCAACTTGAGGATGGCCGGACACTGGCGGATTACAA 36266915 Query 23790 CATACAAAAAGAGTCCACATTACAT 23814 ||| || || ||||| || ||||| Sbjct 36266916 CATTCAGAAGGAGTCAACTCTACAT 36266940 >seq6 Length=53892272 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || || |||||||| || || | Sbjct 13059105 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATTACTCTCGAGGTCGAGAGTTCT 13059046 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | |||| | ||||||||||| | || ||||| || Sbjct 13059045 GATACCATTGACAATGTGAAGGCCAAAA-TCCAGGACAAAGAAGGGATTCCCCCAGACCA 13058987 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || ||||| ||||| ||||| || || | || || | | || ||||| Sbjct 13058986 GCAGCGGTTGATCTTTGCTGGCAAGCAACTCGAGGATGGCCGGACGCTTGCAGACTACAA 13058927 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||||||| || ||||| | || || ||| | | || |||||||| Sbjct 13058926 CATACAAAAGGAATCCACCCTTCACTTGGTTCTCCGTCTGAGAGGAGGA 13058878 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || || || ||||| ||||| | || Sbjct 13066281 ATGCAGATATTTGTGAAGACCCTCACTGGCAAGACCATTACCCTCGAGGTTGAAAGCTCG 13066222 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| || ||| ||||| || || | || || || || Sbjct 13066221 GACACAATTGACAATGTAAAGGCCAAGATTCAAGACAAGGAGGGAATCCCCCCGGACCAG 13066162 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || || || || | |||||| | | ||||| ||| Sbjct 13066161 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGGCTGATTATAAC 13066102 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||||||||| | ||||| || Sbjct 13066101 ATTCAGAAGGAGTCCACACTCCATTTGGT 13066073 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || || ||||| || || || | Sbjct 13065825 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATTACTCTTGAGGTGGAGAGTTCT 13065766 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | |||| || ||||||||||| | || ||||| || Sbjct 13065765 GATACCATTGACAATGTGAAGGCCAAAA-TTCAGGACAAAGAAGGGATTCCCCCAGACCA 13065707 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || ||||| ||||| ||||| || || | || || | | || ||||| Sbjct 13065706 GCAGCGGTTGATCTTTGCTGGCAAGCAACTTGAGGATGGCCGGACGCTTGCAGACTACAA 13065647 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || || ||||| | || || || || | ||| |||||||| Sbjct 13065646 CATCCAGAAGGAATCCACCCTTCACTTGGTCCTACGTTTGAGAGGAGGA 13065598 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || ||||| || || ||||| ||||| || || || | | Sbjct 43309730 AATGCAGATTTTCGTGAAGACTCTCACTGGGAAGACGATTACTCTTGAGGTCGAAAGCTC 43309789 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||||| || ||| | || | |||||| |||||||| ||| | || || || | Sbjct 43309790 TGATACTGTCGACAATGTGAAGGC-TAAAATTCAGGACAAAGAGGGTATTCCTCCGGACC 43309848 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | | || ||||| || |||||||| ||||| | | || || | ||| |||| Sbjct 43309849 AGCAAAGGCTGATCTTTGCTGGTAAACAACTTGAAGATGGCAGGACATTGGCCGACTACA 43309908 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||| || || || Sbjct 43309909 ACATCCAAAAGGAATCGAC 43309927 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || ||||| || |||||||| ||||| | || ||||| | Sbjct 43309958 AATGCAGATTTTCGTCAAGACCCTGACAGGAAAAACCATCACCTTGGAGGTTGAGAGTTC 43310017 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| |||| ||| |||| | ||| || ||||| || || | || || || | Sbjct 43310018 AGACACTATTGATAATGTTAAGGC-AAAGATCCAAGACAAGGAGGGGATCCCACCGGACC 43310076 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | | || || ||||| || || ||||| || | | || | | || |||| Sbjct 43310077 AACAGAGACTGATTTTCGCCGGTAAGCAGCTGGAGGATGGGAGGACCCTTGCGGACTACA 43310136 Query 23789 ACATACAAAAAGAGTCCACA 23808 |||| || || ||||| ||| Sbjct 43310137 ACATTCAGAAGGAGTCTACA 43310156 >seq1 Length=40297282 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || |||||||| || || || || | || Sbjct 18088774 ATGCAGATCTTCGTGAAGACCCTGACCGGGAAGACGATCACGCTGGAGGTGGAGAGCTCG 18088833 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||| ||| || || || || | ||||| ||||| Sbjct 18088834 GACACGATCGACAACGTGAAGGCAAAGATTCAGGATAAGGAGGGCATCCCGCCGGATCAG 18088893 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || ||||| || || ||||| ||||||||||| | | ||||||||| Sbjct 18088894 CAGCGACTCATCTTCGCCGGGAAGCAGCTGGAGGACGAACGCACCCTCGCCGATTACAAT 18088953 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 18088954 ATCCAGAAGGAGTCTAC 18088970 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || |||||||| ||||| || || | | Sbjct 18075450 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACGATCACGCTCGAGGTGGAGAGCTCC 18075509 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| ||||| | || || || || Sbjct 18075510 GACACCATCGACAACGTCAAGGCCAAGATACAGGACAAGGAAGGCATCCCTCCCGACCAG 18075569 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || || || |||| ||||| | | |||||||||| Sbjct 18075570 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGATTACAAC 18075629 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 18075630 ATTCAGAAGGAGTCGAC 18075646 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || ||||| ||||| ||||| || || | | Sbjct 18088318 ATGCAGATATTCGTCAAGACCCTGACCGGCAAAACCATCACGCTCGAGGTGGAGAGCTCC 18088377 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| ||||| | || || || || Sbjct 18088378 GACACCATCGACAACGTCAAGGCCAAGATACAGGACAAGGAAGGCATCCCTCCGGACCAG 18088437 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || ||||| || || || ||||||| ||||| | | |||||||||| Sbjct 18088438 CAGAGGCTCATCTTCGCCGGGAAGCAGCTCGAAGACGGCCGCACCCTCGCCGATTACAAC 18088497 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 18088498 ATTCAGAAGGAGTCGAC 18088514 >seq5 Length=74729908 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || || || ||||| ||||| | | Sbjct 70522767 ATGCAGATCTTTGTCAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTTGAGAGCTCC 70522826 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || || | || ||||| || Sbjct 70522827 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCAGACCAG 70522886 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || |||||||| || || || |||| ||||| | | |||||||||| Sbjct 70522887 CAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTGCCGATTACAAC 70522946 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 70522947 ATCCAGAAGGAGTCCAC 70522963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337989204395108