Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq8 100 4e-16 >seq8 Length=74329289 Score = 100 bits (110), Expect = 4e-16 Identities = 127/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||||||||| | ||| | | ||||||||| || ||||||||||| ||||||| Sbjct 69479142 CTCTCTTTCATAGCGCAAATACAACTTTTCAAATTCTTCACCCCAAACATCTGCCAATCC 69479201 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 || ||||| |||| || | | |||||||| |||| | | || ||| | |||||| | Sbjct 69479202 TGGAGATTCACTTGGACAGAAAAGTGACCAGTGCCCAT-TACTTTGAACCCTTTTCATGA 69479260 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 | |||||||| | ||| || ||| ||| ||||| || | | ||| ||||| Sbjct 69479261 ATAGATCAGGCACCCAAAGGGCATAAAACAGATCCCGAGCACGATGCTCTTC 69479312 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| || ||||||| ||| | || || | |||| | |||| |||||| |||| ||| || Sbjct 69479664 ACCCCCTTGATCTACATAACGAGCTGTATCATTAAATACTCGCAACATCGGAACAATGCC 69479723 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||||||||| || ||| || ||||| ||| | || || |||||| || || Sbjct 69479724 ATTGGATGTTCCATTCGTCCCACGTATGTAACTACCAGTGGCACGGATATTATGAACAGA 69479783 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 || || || ||||| || || || | ||| || |||||| ||||| || || Sbjct 69479784 TACACCAATCCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAAGGTATCATATAT 69479843 Query 78338 ACCCTCTATACTGTCATCCATCATG 78362 ||||| ||||| || || ||||| Sbjct 69479844 GCCCTCAATACTATCTTCTTTCATG 69479868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694625808684640