Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq8 104 2e-17 seq6 84.2 2e-11 >seq8 Length=74329289 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| |||||||| || | || || || || || || ||||| || | Sbjct 36266508 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACTTTGGAAGTTGAGAGCTC 36266567 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | ||| | | || ||| |||||| ||||| |||||| ||||| ||||| Sbjct 36266568 CGACACCATTGACAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGATCA 36266627 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||||||||||| | ||| || |||||| | || ||| || ||| |||| ||||| || Sbjct 36266628 GCAAAGGCTTATCTTTGCTGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTACAA 36266687 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || || || || || || || || ||| |||| ||| | || |||| Sbjct 36266688 CATCCAGAAGGAGTCCACTCTTCACTTGGTGCTGCGACTGAGGGGAGGCA 36266737 >seq6 Length=53892272 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| ||||| | || ||||| || || ||| | || |||| | Sbjct 43309047 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 43309106 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG-ATCA 111218 || | || | | || ||| |||||| ||||| ||||| | |||| || | || Sbjct 43309107 GACACAGTCGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGG-GATCCCTCCGGACCA 43309165 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || |||||||| | ||| ||||| || |||||||| ||| ||||||||||||| Sbjct 43309166 GCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATAA 43309225 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || || || || || || || || ||| | ||||| | || |||| Sbjct 43309226 CATTCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTCAGGGGAGGCA 43309275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421785747780376