Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq64 122 2e-22 seq115 100 6e-16 seq101 100 6e-16 seq80 100 6e-16 seq139 98.7 2e-15 seq107 98.7 2e-15 seq98 98.7 2e-15 seq92 98.7 2e-15 seq77 98.7 2e-15 seq75 98.7 2e-15 seq72 98.7 2e-15 seq56 98.7 2e-15 seq47 98.7 2e-15 >seq64 Length=9524166 Score = 122 bits (134), Expect = 2e-22 Identities = 565/880 (64%), Gaps = 15/880 (2%) Strand=Plus/Plus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 |||| | ||||||||| || || || | || ||||| |||||||||||||| | |||| Sbjct 403662 TTCTGTATGTTCCCAATTCACTACCCACAGATCTGGGAGATGTACAAGAAGGCCGAGGCA 403721 Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCAGAC-GTCGTCGACTGGCGTGAGAA 229868 | || ||||| | |||||||| | || |||| |||| ||| ||| ||||| Sbjct 403722 TCCTTTTGGACGGCCGAGGAAGTCGATTTGTCACAAGACGGTCG-CGATTGG---GAGAA 403777 Query 229869 ACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGA 229928 ||||| |||| ||| || || |||||||||||| | || | ||| ||||| | ||||| Sbjct 403778 TCTCAACGACGGCGAGCGACACTTCATCAAACACGTGCTCGCTTTCTTCGCCGCATCCGA 403837 Query 229929 TGGTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGG 229987 || || || | || |||||| || || | ||| || || || | |||| Sbjct 403838 CGGAATCGTTCTCGAGAATCTGGCTTCCCGATTCA-TGTCCGATGTTCAAGTCTCGGAGG 403896 Query 229988 CACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTC 230047 | || || || | || ||| | | ||| ||||| || || || | Sbjct 403897 CGCGTGCTTTCTACGGTTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGCC 403956 Query 230048 TGCTTATCGACGCGCTTATTTCCGACGAGCAAGAACGGA-ACGAGCTTTTTGATGCCATT 230106 | || ||||| | || ||| | |||| | || || | || ||| ||||| Sbjct 403957 TCCTCCTCGACACATACATCAAGGAC-AACAAGGAGAGAGACCATCTCTTTCGCGCCATC 404015 Query 230107 GAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGT 230166 || | |||||| || || || || ||||||| || |||| | || | Sbjct 404016 GAGACCATCCCTTGCGTCGCGAAGAAAGCCCAGTGGGCGATGACATGGATCGACGGATCT 404075 Query 230167 AAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGG 230226 | | || ||||||||| |||| || | | || || |||||||| | || ||||| Sbjct 404076 CAGACCTTCGCCGAGCGTATCGTGGCTTTCGCCTGCGTCGAAGGTATCTTCTTCTCCGGT 404135 Query 230227 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 230286 ||||||||| | || || ||||| ||| ||| | ||||| || | | || Sbjct 404136 AGTTTCTGCTCGATTTTCTGGCTTAAGAAGCGCGGTCTCATGCCCGGATTAACCTTCTCC 404195 Query 230287 AACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAG-CTTATGTATTC 230345 || ||||| ||| || ||||| || | || | | || ||| | || || || | Sbjct 404196 AATGAGTTGATCTCGCGAGACGAAGGCTTACA-CTGCGATTTCGCGTGCCTGATCTACAC 404254 Query 230346 AAAGCTCCAGAAC-AAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTG 230404 || || || ||||| | ||| || ||| |||| | || || || | Sbjct 404255 -TCTCTTGAGGACGAAGCTCTCGGAAGAGCGCGTGAAATCAATCGTCTGCGACGCCGTCG 404313 Query 230405 AAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGGCATGAACGCT 230463 | | ||| | |||||| | || ||||| |||| || ||| || | || |||||| | Sbjct 404314 AGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCCTG-CGCGTTGGTGGGGATGAACCGT 404372 Query 230464 GAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTAC 230523 || || ||| | || |||||||||||||| || || | || | | ||| ||||| ||| Sbjct 404373 GACCTAATGAGTCAATACATCGAATTCGTTGCGGATAGGCTTCTGGGTGCGCTTGGATAC 404432 Query 230524 GAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGG 230583 | || |||||| || || |||| | ||||| || || |||||||| ||| Sbjct 404433 GGCAAGGTGTACGGTGTGGCTAATCCGTTTGATTGGATGGAACTTATCTCGCTTCAGGGG 404492 Query 230584 AAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 || || ||||||||||| ||| | || | || || |||| Sbjct 404493 AAAACAAACTTCTTCGAGAAGAGAGTTGGCGATTACCAGA 404532 >seq115 Length=22393718 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || |||||||||||||||| |||||||||| || || |||| || ||||||||||||||| Sbjct 20727911 CTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 20727852 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 20727851 AGCCCCACGGTGGGC 20727837 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 20731559 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 20731500 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 20731499 CCCACGGTGGGC 20731488 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||| | Sbjct 14719635 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 14719694 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14719695 CCCACGGTGGGC 14719706 >seq101 Length=14560423 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || |||||||||||||||| |||||||||| || || |||| || ||||||||||||||| Sbjct 6733741 CTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 6733682 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 6733681 AGCCCCACGGTGGGC 6733667 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||| ||| Sbjct 13822773 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCAAGC 13822832 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 13822833 CCCACGGTGGGC 13822844 >seq80 Length=21647715 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 7394487 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7394546 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 7394547 CCCCACGGTGGGC 7394559 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2391662 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2391721 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2391722 CCCACGGTGGGC 2391733 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 20820170 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 20820111 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 20820110 CCCACGGTGGGC 20820099 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 ||| ||||||||||||||| ||||||||| || || |||| || |||||||||||||| Sbjct 19913356 GCTAGCCCGTCTAGCTCAGATCGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 19913297 Query 165766 GAGCCCCACGATGGGC 165781 |||| ||||| | ||| Sbjct 19913296 GAGCTCCACGGTAGGC 19913281 >seq139 Length=20634497 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 10321956 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10321897 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 10321896 CCCACGGTGGGC 10321885 Score = 84.2 bits (92), Expect = 5e-11 Identities = 62/71 (87%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||| |||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 18057828 GCCCGTCTAACTCAGTTGGTAGAGCGCAAG-CTCTTAACCTTGTGGTCGTGGGTTCGAGC 18057770 Query 165770 CCCACGATGGG 165780 |||| | |||| Sbjct 18057769 CCCATGGTGGG 18057759 >seq107 Length=3545832 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 251276 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 251217 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 251216 CCCACGGTGGGC 251205 >seq98 Length=12372032 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 634679 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 634620 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 634619 CCCACGGTGGGC 634608 >seq92 Length=17487894 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 16006759 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16006700 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 16006699 CCCACGGTGGGC 16006688 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 61350 TATCTAGGAAACATAGACTCTAAAAGAGATTGGGGATATGCGGAAGATTATATCGAGGCT 61409 || || ||||||||| | || |||||| ||||||| || | ||| || | || || Sbjct 15441247 TACCTCGGAAACATACAAGCTTCAAGAGACTGGGGATTCGCTGGAGACTACGTTGAAGCA 15441306 Query 61410 ATGTGGTTGATGTTGCAACAAGATACTCCAGATGACTACGTTATTGCGACTG 61461 |||||||||||| |||| ||||| | |||||||| |||||| ||||||||| Sbjct 15441307 ATGTGGTTGATGCTGCAGCAAGAGAAACCAGATGATTACGTTGTTGCGACTG 15441358 >seq77 Length=18658056 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 16953698 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16953639 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 16953638 CCCACGGTGGGC 16953627 >seq75 Length=6520592 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4727965 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4727906 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4727905 CCCACGGTGGGC 4727894 >seq72 Length=2807273 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2785840 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2785781 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2785780 CCCACGGTGGGC 2785769 >seq56 Length=596944 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 134577 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 134518 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 134517 CCCACGGTGGGC 134506 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 189367 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 189426 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 189427 CCCACGGTGGGC 189438 >seq47 Length=18124089 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 12141327 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12141268 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 12141267 CCCACGGTGGGC 12141256 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 17242104 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17242045 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 17242044 CCCACGGTGGGC 17242033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057821831460800