Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq64 165 8e-36 >seq64 Length=9524166 Score = 165 bits (182), Expect = 8e-36 Identities = 393/584 (67%), Gaps = 9/584 (2%) Strand=Plus/Minus Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 ||||| || ||||||||||| ||||| || ||||||| ||| | || || || || Sbjct 404248 ATCAGGCACGCGAAATCGCAGTGTAAGCCTTCGTCTCGCGAGATCAACTCATTGGAGAAG 404189 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 || || |||||||| || || ||||| | ||| || |||| | ||| || || Sbjct 404188 GTTAATCCGGGCATGAGACCGCGCTTCTTAAGCCAGAAAATCGAGCAGAAACTACCGGAG 404129 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG 17137 ||||| ||||| |||||| | || || || | | || |||||| | ||| | | Sbjct 404128 AAGAAGATACCTTCGACGCAGGCGAAAGCCACGATACGCTCGGCGAAGGTCTGAGATCCG 404069 Query 17138 TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197 | ||| ||||| || | |||||| |||||| | | | |||| || || || ||| Sbjct 404068 T--CGA-TCCATGTCATCGCCCACTGGGCTTTCTTCGCGACGCAAGGGATGGTCTCGATG 404012 Query 17198 GCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTG 17257 || ||| | | ||| | |||| ||| | || || || |||| ||| |||||| Sbjct 404011 GCGCGAAAGAGATGGTCTCTCTCCTTGTTGTCCTTGATGTATGTGTCGAGGAGGAGGCTG 403952 Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTC 17316 ||||| |||||||| |||||||| || || ||||| || ||||| |||||| || || || Sbjct 403951 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAACCGTAGAAAGCA-CGCGCCTC 403893 Query 17317 CGCTATTTGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375 || | |||||| || || | |||||| || ||||| ||| ||||| |||||| Sbjct 403892 CGAGACTTGAACATCGGACAT-GAATCGGGAAGCCAGATTCTCGAGAACGATTCCGTCGG 403834 Query 17376 TCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTG-TAAGAACG 17434 |||||||| || || | | || || ||||| | | ||| ||| | | ||| Sbjct 403833 ATGCGGCGAAGAAAGCGAGCACGTGTTTGATGAAGTGTCGCTCG-CCGTCGTTGAGATTC 403775 Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 ||| || |||| || | ||| ||||| |||| |||||||| ||| | Sbjct 403774 TCCCAATCGCGACCGTCTTGTGACAAATCGACTTCCTCGGCCGTCCAAAAGGATGCCTCG 403715 Query 17495 GCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||||| || ||||| | ||| || | ||| || || ||||| Sbjct 403714 GCCTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATTGGGAA 403671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517544564908800