Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq126 109 4e-19 seq77 89.7 4e-13 >seq126 Length=8766530 Score = 109 bits (120), Expect = 4e-19 Identities = 214/311 (69%), Gaps = 4/311 (1%) Strand=Plus/Minus Query 18927 CGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCA 18986 ||||| || || |||| |||||||||| ||| || || |||| || |||||| Sbjct 4332421 CGACGCATCATATTATCAGCTTGGAATCCTTCTGATCTCAAATTGATGGCGCTTCCTCCA 4332362 Query 18987 TGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAG 19046 ||||||| ||| ||||| || || ||| | || || | || || ||| | || ||| Sbjct 4332361 TGTCACATGTTTGCACAGTTCTATGTAGCAGAAGGAGAGCTCTCATGTCAAATGTATCAG 4332302 Query 19047 AGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACC 19106 | || | ||| ||||||||||| |||||||| ||||||||| || | |||||||| Sbjct 4332301 CGTTCAGCGGACATGGGCCTTGGTGTACCGTTTAACATTGCTTCCTACTCTCTTCTTACT 4332242 Query 19107 TACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGAT 19166 | ||| | || ||||| | ||| | || || || | |||| || |||||| Sbjct 4332241 TGCATCCTCGCTCATGTCTGTGATCTTGTTCCTGGTGACTTTACTCATGTTATTGGGGAT 4332182 Query 19167 GCACATATTTACTTGAATCATAT-AGATGCTTTAAAAGTGCAGCTAGCTCGATCC-CCAA 19224 || ||| | ||| |||||| | ||| || | ||| ||| || | |||| |||| Sbjct 4332181 GCTCATGTGTACCGAAATCATGTGAGA-CCTCTTCAAGAGCAACT-TCAGAATCCACCAA 4332124 Query 19225 AACCTTTTCCT 19235 |||| |||||| Sbjct 4332123 AACCGTTTCCT 4332113 >seq77 Length=18658056 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 18865 TACAG--CAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGA 18922 ||||| |||||| | ||||||||| | ||| || | | || || | || || || Sbjct 13060478 TACAGGACAAGGATTTGATCAGCTGTTAGATGTAATTAACAAGATCAAGAACAATCCTGA 13060537 Query 18923 AAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACC 18982 ||||| || || || || ||||||||||| ||| | | |||| || || Sbjct 13060538 TGATCGACGGATTATAATCTCAGCTTGGAATCCATCTGATCTTAAACTGATGGCGCTTCC 13060597 Query 18983 TCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATA 19042 |||||| |||| ||| ||||||||||| || || || ||| | || || ||| | || Sbjct 13060598 TCCATGCCACATGTTTGCACAGTTTTACGTAGCGAATGGAGAACTTTCATGTCAAATGTA 13060657 Query 19043 CCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCT 19088 || | || | |||||||| || || |||||||| ||||||||| Sbjct 13060658 TCAACGTTCAGCTGATATGGGTCTCGGTGTACCGTTTAACATTGCT 13060703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399503220967200