Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq126 114 9e-21 seq77 91.5 1e-13 >seq126 Length=8766530 Score = 114 bits (126), Expect = 9e-21 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| || ||| ||| |||| || ||||| || |||| | ||||||||| | Sbjct 4332177 TGAGCATCCCCAATAACATGAGTAAAGTCACCAGGAACAAGATCACAGACATGAGCGAGG 4332236 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 |||||||| | |||||| ||| |||||||||||| || || || | ||||| || ||| Sbjct 4332237 ATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGTACACCAAGGCCCATGTCCGCT 4332296 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACA 101887 || | ||||||| |||||| || |||| ||| || ||||| || || || | Sbjct 4332297 GAACGCTGATACATTTGACATGAGAGCTCTCCTTCTGCTACATAGAACTGTGCAAACATG 4332356 Query 101888 TGACAAGGCGGCAACACCAT---TTTAGGAATGTCTGAAACATTCCAAGC 101934 ||||| || || | | |||| ||| || || ||| ||||||||| Sbjct 4332357 TGACATGGAGGAAGCGCCATCAATTTGAGA---TCAGAAGGATTCCAAGC 4332403 >seq77 Length=18658056 Score = 91.5 bits (100), Expect = 1e-13 Identities = 183/270 (68%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 ||||||||| | ||||| || | | ||| || |||||||||||| || || || | Sbjct 13060739 GACATGAGCGAGAATGCATGTAAGTAAAGAGTACGAAGCAATGTTAAACGGTACACCGAG 13060680 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAA 101874 |||||||||||||| | |||||||| |||||| ||||| | ||||| || ||||| Sbjct 13060679 ACCCATATCAGCTGAACGTTGATACATTTGACATGAAAGTTCTCCATTCGCTACGTAAAA 13060620 Query 101875 TTGACTTAATACATGACAAGGCGGCAACACCAT---TTTAGGAATGTCTGAAACATTCCA 101931 || || | || || || || | | |||| |||| || || || |||||| Sbjct 13060619 CTGTGCAAACATGTGGCATGGAGGAAGCGCCATCAGTTTAAGA---TCAGATGGATTCCA 13060563 Query 101932 AGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTT 101991 ||| | |||| |||| || ||| ||| || | || || | | ||| | | | Sbjct 13060562 AGCTGAGATTATAATCCGTCGATCATCAGGATTGTTCTTGATCTTGTTAATTACATCTAA 13060503 Query 101992 TAATTGGTCAACTCCTTCTCCTTTATAATC 102021 | || |||| ||||| |||| ||||||| Sbjct 13060502 CAGCTGATCAAATCCTTGTCCTGTATAATC 13060473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361250495560160