Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq92 98.7 9e-16 seq64 98.7 9e-16 seq72 95.1 1e-14 seq75 93.3 4e-14 seq101 89.7 4e-13 seq139 87.8 2e-12 >seq92 Length=17487894 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || | || || || ||||||||| ||| ||| | || Sbjct 12099585 ATGCAAATCTTCGTTAAGACTCTTACAGGGAAGACCATTACCTTAGAAGTTGAAAGCTCA 12099644 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | ||| || ||| ||||||||||| | || ||||||| Sbjct 12099645 GACACAATAGACAACGTAAAGGCTAAGATTCAAGATAAAGAAGGAATCCCTCCAGATCAA 12099704 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||||||||||||||| || |||||||| || ||| || |||| |||||||| Sbjct 12099705 CAAAGACTTATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACATTGGCTGATTACAAC 12099764 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || | || || || ||||||||| |||| Sbjct 12099765 ATCAAAAAAGAGTCAACTCTTCACTTGGT 12099793 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| ||||| |||| || | || || | |||||| ||| ||| || | || Sbjct 10601258 ATGCAGATATTTGTCAAGACTCTTACCGGTACAACCATAACCCTAGAAGTTGAGAGCTCA 10601199 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || |||| || ||| || || ||||| | || |||||| Sbjct 10601198 GACACTATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCCTCCGGATCAA 10601139 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||| |||||||| || |||||||| || ||| || |||| ||||||||| Sbjct 10601138 CAAAGACTCATCTTTGCCGGTAAACAACTTGAGGATGGTCGTACATTGGCAGATTACAAT 10601079 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||| ||||| || ||||| ||| |||| Sbjct 10601078 ATTCAAAAGGAGTCGACTCTCCACTTGGT 10601050 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| ||||| | ||||| | || || |||||||||||| ||| ||| | || Sbjct 10601030 ATGCAGATATTTGTGAAAACCCTCACCGGTAAAACCATTACCCTAGAAGTGGAGAGCTCA 10600971 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | |||| || ||| || || ||||| | || |||||| Sbjct 10600970 GACACTATTGACAACGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCCTCCGGATCAA 10600911 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||| ||||| || || |||||||| || ||| ||| | || |||||||| Sbjct 10600910 CAGAGACTCATCTTCGCAGGTAAACAACTTGAGGATGGTCGAACGCTTGCAGATTACAAC 10600851 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || ||||||||||| || |||||| | || |||| | || || ||| Sbjct 10600850 ATCCAGAAGGAATCAACACTTCACCTTGTTCTACGTCTTCGTGGTGGG 10600803 >seq64 Length=9524166 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || |||||||| || | || || ||||||||||| ||| |||| | || Sbjct 3905540 ATGCAGATTTTCATCAAGACCCTCACCGGAAAAACCATTACTTTGGAAGTGGAAAGCTCA 3905599 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | | ||| || || || || ||||| | || | || || Sbjct 3905600 GACACGATTGATAACGTGAAGGCTAAGATACATGACAAGGAAGGGATCCCACTTGACCAG 3905659 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||| || || | || ||||| || || ||| |||| |||| ||||||||| Sbjct 3905660 CAAAGACTCATTTTCGGTGGGAAACAGCTTGAGGATGGTCGAACTTTGGCTGATTACAAT 3905719 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 |||||||||||||| ||||||||| |||| Sbjct 3905720 ATTCAGAAGGAATCGACTCTTCACTTGGT 3905748 >seq72 Length=2807273 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || ||||| ||||||||||| ||| ||| || | || Sbjct 227040 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAAACCATCACCTTGGAAGTTGAGAGCTCA 226981 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | || | || ||||| || || |||||| | || || || Sbjct 226980 GACACGATCGACAATGTCAAAGCTAAAATCCAAGACAAGGAAGGTATCCCACCGGACCAG 226921 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | ||||| || || || ||| ||||||| | || |||| |||||||| Sbjct 226920 CAAAGATTGATCTTCGCCGGAAAGCAATTGGAAGACGGCCGTACCTTGGCTGATTACAAC 226861 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| || || |||||| |||| || || | || ||||| Sbjct 226860 ATTCAGAAGGAGTCAACCCTTCACTTGGTCTTGCGTCTTCGTGGAGG 226814 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || | || ||||| ||||| ||| ||| |||| | | Sbjct 227724 ATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCT 227665 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | | ||||| || || ||||| ||||| | || ||||| Sbjct 227664 GACACGATCGACAACGTTAAGGCCAAGATCCAGGATAAGGAAGGGATTCCTCCGGATCAG 227605 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||||||||| || || || || ||||||| | || |||| |||||||| Sbjct 227604 CAAAGACTTATCTTCGCCGGTAAGCAGTTGGAAGACGGCCGTACCTTGGCGGATTACAAC 227545 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||||||||| || || ||| |||| Sbjct 227544 ATCCAGAAGGAATCCACCCTCCACTTGGT 227516 >seq75 Length=6520592 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||| | || ||||| ||||| ||| ||| |||| | | Sbjct 967473 ATGCAAATTTTCGTTAAAACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCC 967532 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | | |||| || || || || ||||| | ||| ||||| Sbjct 967533 GACACGATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAG 967592 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| |||||||| ||||| || ||| ||||||| || |||| |||||||| Sbjct 967593 CAAAGGCTTATCTTCGCGGGAAAGCAATTGGAAGACGGTCGCACGTTGGCTGATTACAAC 967652 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||||||||| || |||||| |||| Sbjct 967653 ATCCAGAAGGAATCCACCCTTCACTTGGT 967681 >seq101 Length=14560423 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||| | || ||||| ||||| || ||| || | | Sbjct 13328978 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGAGCTCT 13329037 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| ||| || || || ||||| | || ||||| Sbjct 13329038 GACACCATCGACAACGTTAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCGGATCAG 13329097 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | ||||| || || ||||| |||||||| | ||| | ||||||||||| Sbjct 13329098 CAAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGCCGTACTTTAGCCGATTACAAC 13329157 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||||||||| ||||| |||| | || || ||||||| Sbjct 13329158 ATCCAGAAGGAATCTACCCTTCATTTGGTCCTCCGTCTAAGAGGAGG 13329204 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| |||| || | || || || ||||| || ||| ||| | | Sbjct 13329205 AATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACCATCACTCTTGAAGTTGAAAGCTC 13329264 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | | |||| || ||| || ||||||||| | || ||||| Sbjct 13329265 TGACACCATTGACAACGTTAAAGCTAAGATTCAAGACAAAGAAGGTATTCCTCCGGATCA 13329324 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||||||||||||| || || || ||||| |||||| | |||| | || || ||||| Sbjct 13329325 GCAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGAAGAACTCTCGCTGACTACAA 13329384 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171 || || ||||| || ||||| || ||||| Sbjct 13329385 CATCCAAAAGGAGTCCACTCTCCATTTGGTG 13329415 >seq139 Length=20634497 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||||||| | |||||| |||| || || ||||| || ||| || | | Sbjct 11242238 ATGCAAATATTCGTGAAAACACTGACTGGAAAGACCATCACTCTCGAGGTTGAGAGCTCT 11242297 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| ||| || || || ||||| | || ||||| Sbjct 11242298 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGGATTCCTCCGGATCAG 11242357 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | |||||||| || |||||||| |||||| | || | || |||||||| Sbjct 11242358 CAAAGATTGATCTTTGCCGGAAAACAACTAGAAGATGGCCGGACCTTAGCTGATTACAAC 11242417 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 || || ||||| ||||| ||||| Sbjct 11242418 ATCCAAAAGGAGTCTACGCTTCA 11242440 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | || ||||||| ||||||||||||||| || |||||||| || Sbjct 14478390 GATAAGGAAGGAATCCCTCCGGATCAACCAAGACTTATCTTTGCTGGGAAACAACTTGAG 14478331 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||| || |||| |||||||||||||| ||||| || ||||| ||| |||| Sbjct 14478330 GATGGTCGTACATTGGCAGATTACAATATTCAAAAGGAGTCGACTCTGCACTTGGT 14478275 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| |||||| | |||| | ||||| || || || ||| || |||| | || Sbjct 14478255 ATGCAGATATTCGTTAAAAATCTTACGGGAAAGACTATAACCCTTGAGGTGGAAAGCTCA 14478196 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || || | || | ||| || || | ||| ||||| | || ||||||| Sbjct 14478195 GACACTATGACA-ATGTCAAGGCCAAGATCCAAGCTAAGGAAGGGATCCCTCAAGATCAA 14478137 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| ||||| || || |||||| || |||| | || ||||||||| Sbjct 14478136 CAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCAGAACTTTAGCGGATTACAAT 14478077 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || |||||||| || || || ||| | || || || | || || ||| Sbjct 14478076 ATCCAGAAGGAGTCAACACTACACCTTGTTCTAAGACTCCGTGGTGGG 14478029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428335164744800