Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq92 98.7 8e-16 seq72 98.7 8e-16 seq126 89.7 4e-13 seq75 89.7 4e-13 seq64 89.7 4e-13 seq139 87.8 1e-12 seq101 87.8 1e-12 seq80 84.2 2e-11 >seq92 Length=17487894 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | || || | || || || ||||||||| ||| ||| | || Sbjct 12099585 ATGCAAATCTTCGTTAAGACTCTTACAGGGAAGACCATTACCTTAGAAGTTGAAAGCTCA 12099644 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | | ||| || ||| ||||||||||| | || ||||||| Sbjct 12099645 GACACAATAGACAACGTAAAGGCTAAGATTCAAGATAAAGAAGGAATCCCTCCAGATCAA 12099704 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||||||||||||||| || |||||| | || ||| || |||| |||||||| Sbjct 12099705 CAAAGACTTATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACATTGGCTGATTACAAC 12099764 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 || |||| || || ||||||||| |||| Sbjct 12099765 ATCAAAAAAGAGTCAACTCTTCACTTGGT 12099793 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 ||| ||||||||||||||||||| ||||||||||| |||||| ||| || || Sbjct 12099470 AGACCAACAAAGACTTATCTTTGTCGGCAAACAATTAGAAGATGGACGTACTTTGAATGA 12099529 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||||||||| ||||| ||| |||| | || || |||| || Sbjct 12099530 ATACAATATCCAAAAGGAATCAACTCTCCACTTGGTCCTGCGTTTGAGAGGTGG 12099583 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/156 (72%), Gaps = 5/156 (3%) Strand=Plus/Minus Query 25111 TCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTG 25170 ||||| ||| ||| || |||||||| | || |||||||||| |||| ||||||| Sbjct 10601643 TCAAGTCAAAGATTCAAGACAAAGAAGGAATTCCTTCAGATCAACAACGACTAATCTTTG 10601584 Query 25171 CGG-----GCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGA 25225 | | ||||||| || |||||| ||| ||| ||||||||||| |||||||| Sbjct 10601583 CCGTGCCGGCAAACAGTTAGAAGATGGACGTACTTTGGGTGATTACAATATCCAAAAGGA 10601524 Query 25226 ATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| ||||| ||| |||| || | || |||| || Sbjct 10601523 ATCAACTCTCCACTTGGTTCTATGTTTGAGAGGTGG 10601488 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 |||||||||||||| |||||||| || |||||| | || ||| || |||| ||| Sbjct 10601144 GATCAACAAAGACTCATCTTTGCCGGTAAACAACTTGAGGATGGTCGTACATTGGCAGAT 10601085 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||||||||||||||||| || ||||| ||| |||| Sbjct 10601084 TACAATATTCAAAAGGAGTCGACTCTCCACTTGGT 10601050 >seq72 Length=2807273 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | || || ||||| ||||||||||| ||| ||| || | || Sbjct 227040 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAAACCATCACCTTGGAAGTTGAGAGCTCA 226981 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | || |||| ||||| || || |||||| | || || || Sbjct 226980 GACACGATCGACAATGTCAAAGCTAAAATCCAAGACAAGGAAGGTATCCCACCGGACCAG 226921 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | ||||| || || || ||||||||||| | || |||| |||||||| Sbjct 226920 CAAAGATTGATCTTCGCCGGAAAGCAATTGGAAGACGGCCGTACCTTGGCTGATTACAAC 226861 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| ||||| || || |||||| |||| || || | || ||||| Sbjct 226860 ATTCAGAAGGAGTCAACCCTTCACTTGGTCTTGCGTCTTCGTGGAGG 226814 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | || || | || ||||| ||||| ||| ||| |||| | | Sbjct 227724 ATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCT 227665 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | | ||| || || ||||| ||||| | || ||||| Sbjct 227664 GACACGATCGACAACGTTAAGGCCAAGATCCAGGATAAGGAAGGGATTCCTCCGGATCAG 227605 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||||||||||| || || || || |||||||| | || |||| |||||||| Sbjct 227604 CAAAGACTTATCTTCGCCGGTAAGCAGTTGGAAGACGGCCGTACCTTGGCGGATTACAAC 227545 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 || || |||||||| || || ||| |||| Sbjct 227544 ATCCAGAAGGAATCCACCCTCCACTTGGT 227516 >seq126 Length=8766530 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | || || | || ||||| ||||| || || ||| | | Sbjct 5178668 ATGCAAATCTTCGTGAAGACTCTTACAGGCAAGACCATAACATTGGAGGTTGAAAGCTCC 5178609 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||||| | | | |||| ||||| || |||||||| | || ||| ||| Sbjct 5178608 GACACGGTTGACAACGTCAAAGCTAAAATCCAGGAGAAAGAAGGAATTCCTTCAGACCAA 5178549 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||| | || ||||| || ||||| || |||||| || ||| ||||||||| Sbjct 5178548 CAGAGATTGATATTTGCAGGGAAACAGTTAGAAGATGGACGTACATTGGGTGATTACAAT 5178489 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||||||||| ||||| ||| |||| |||| ||| |||| || Sbjct 5178488 ATCCAAAAGGAATCGACTCTCCACTTGGTTCTACGTTTAAGAGGTGG 5178442 >seq75 Length=6520592 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| | || ||||| ||||| ||| ||| |||| | | Sbjct 967473 ATGCAAATTTTCGTTAAAACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCC 967532 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | | || || || || || ||||| | ||| ||||| Sbjct 967533 GACACGATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAG 967592 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| |||||||| ||||| || ||||||||||| || |||| |||||||| Sbjct 967593 CAAAGGCTTATCTTCGCGGGAAAGCAATTGGAAGACGGTCGCACGTTGGCTGATTACAAC 967652 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 || || |||||||| || |||||| |||| Sbjct 967653 ATCCAGAAGGAATCCACCCTTCACTTGGT 967681 >seq64 Length=9524166 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || |||||||| || | || || ||||||||||| ||| |||| | || Sbjct 3905540 ATGCAGATTTTCATCAAGACCCTCACCGGAAAAACCATTACTTTGGAAGTGGAAAGCTCA 3905599 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | ||| || || || || ||||| | || | || || Sbjct 3905600 GACACGATTGATAACGTGAAGGCTAAGATACATGACAAGGAAGGGATCCCACTTGACCAG 3905659 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||||| || || | || ||||| | || ||| |||| |||| ||||||||| Sbjct 3905660 CAAAGACTCATTTTCGGTGGGAAACAGCTTGAGGATGGTCGAACTTTGGCTGATTACAAT 3905719 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||||| |||||||| ||||||||| |||| Sbjct 3905720 ATTCAGAAGGAATCGACTCTTCACTTGGT 3905748 >seq139 Length=20634497 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | || ||||||| ||||||||||||||| || |||||| | || Sbjct 14478390 GATAAGGAAGGAATCCCTCCGGATCAACCAAGACTTATCTTTGCTGGGAAACAACTTGAG 14478331 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||| || |||| |||||||||||||||||||| || ||||| ||| |||| Sbjct 14478330 GATGGTCGTACATTGGCAGATTACAATATTCAAAAGGAGTCGACTCTGCACTTGGT 14478275 >seq101 Length=14560423 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| |||||| | ||||| || || ||||| ||||||||| | ||| | |||||| Sbjct 13329092 GATCAGCAAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGCCGTACTTTAGCCGAT 13329151 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| || || ||||||||||| ||||| |||| | || || ||||||| Sbjct 13329152 TACAACATCCAGAAGGAATCTACCCTTCATTTGGTCCTCCGTCTAAGAGGAGG 13329204 >seq80 Length=21647715 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || |||| || | || ||||||||||| || ||| ||| | Sbjct 2366333 AATGCAAATCTTTGTCAAGACTCTAACTGGCAAAACCATCACACTAGAAGTTGAAAGTTC 2366392 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | || |||| || ||| || |||||||| | || ||||| Sbjct 2366393 TGATACCATTGACAATGTCAAAGCTAAGATTCAGGACAAAGAAGGAATCCCTCCGGATCA 2366452 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTAC 25211 || |||||||||||||| || || |||| || ||| || | || | || |||||| Sbjct 2366453 GCAGAGACTTATCTTTGCTGGAAAGCAATGAGAGGATGGTCGCACAC--TCGCTGATTAC 2366510 Query 25212 AATATTCAAAAGGAATCTACTCTTCAC 25238 |||||||||||||| ||||| |||||| Sbjct 2366511 AATATTCAAAAGGAGTCTACACTTCAC 2366537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410795998946240