Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq101 107 3e-18 seq80 104 3e-17 seq139 89.7 8e-13 seq92 89.7 8e-13 >seq101 Length=14560423 Score = 107 bits (118), Expect = 3e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| || | | |||||||| | |||||||| || || || ||||| | Sbjct 13329206 TTCCTCCTCTTAGACGGAGGACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCGG 13329147 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||| | || ||| || || |||||||| || || |||||||||||||||||||||| Sbjct 13329146 CTAAAGTACGGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCCGGAG 13329087 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| || ||||| Sbjct 13329086 GAATTCCTTCCTTGTCTTG 13329068 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | |||||||| | ||| || || || || || || || | Sbjct 13329432 CCACCACGAAGACGAAGCACCAAATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCG 13329373 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| || | ||| || ||||| || || | ||||||||||||||||||| Sbjct 13329372 AGAGTTCTTCCATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGA 13329313 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 13329312 ATACCTTCTTTGTCTTG 13329296 >seq80 Length=21647715 Score = 104 bits (114), Expect = 3e-17 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 146081 GTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 ||||| || ||| || ||||| ||||| | || || | | ||| ||| |||| ||||| Sbjct 2366530 GTAGACTCCTTTTGA-ATATTGTAATCAGCGAGTGTGCGACCATCCTCTCATTGCTTTCC 2366472 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNN 146199 |||||| || | ||| |||||||||||||| ||||||||||| || || Sbjct 2366471 AGCAAAGATAAGTCTCTGCTGATCCGGAGGGATTCCTTCTTTGTCCTGAATCTTAGCTTT 2366412 Query 146200 NNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGT 146259 ||||| |||||||| |||||||||||||| ||||| || |||| || Sbjct 2366411 GACATTGTCAATGGTATCAGAACTTTCAACTTCTAGTGTGATGGTTTTGCCAGTTAGAGT 2366352 Query 146260 TTTAATGAATATTTGCATT 146278 || | || ||||||||| Sbjct 2366351 CTTGACAAAGATTTGCATT 2366333 >seq139 Length=20634497 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | || | ||||| || | ||| || || ||| || ||||| ||||||| Sbjct 14478257 CCACCTCTCAACCTAAGAACCAAGTGCAGAGTCGACTCCTTTTGA-ATATTGTAATCTGC 14478315 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || | | ||| || | |||||| |||||||| || | |||| | ||||||||||| Sbjct 14478316 CAATGTACGACCATCCTCAAGTTGTTTCCCAGCAAAGATAAGTCTTGGTTGATCCGGAGG 14478375 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 14478376 GATTCCTTCCTTATCTTG 14478393 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || || ||||| | | || | || ||| |||| ||||||||| ||||| ||||||||| Sbjct 11242419 ATGTTGTAATCAGCTAAGGTCCGGCCATCTTCTAGTTGTTTTCCGGCAAAGATCAATCTT 11242360 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||||||||| ||||| || || || Sbjct 11242359 TGCTGATCCGGAGGAATCCCTTCCTTGTCCTG 11242328 >seq92 Length=17487894 Score = 89.7 bits (98), Expect = 8e-13 Identities = 151/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || | ||||| || | ||| || ||||| || || ||||| | Sbjct 12099811 CCACCTCTCAACCTAAGAACCAAGTGAAGAGTTGACTCTTTTTTGATGTTGTAATCAGCC 12099752 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || | |||||| |||||||| || | |||||| ||||| ||||| Sbjct 12099751 AATGTACGACCATCCTCAAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGATCTGGAGGG 12099692 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||||||||| || ||||| ||||| ||| Sbjct 12099691 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACGTTGTCTATTGTGTCTGAGCTTTCAACT 12099632 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| || || || || ||||| | || |||| ||| |||||||| Sbjct 12099631 TCTAAGGTAATGGTCTTCCCTGTAAGAGTCTTAACGAAGATTTGCAT 12099585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743524912947200