Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq101 105 4e-18 seq75 104 2e-17 seq115 91.5 1e-13 seq72 87.8 1e-12 >seq101 Length=14560423 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || |||| ||| | || ||| ||||| |||||||| || | | Sbjct 1860571 CCACCACGAAGCCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 1860512 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| |||| ||||||||||| || ||||| || |||| |||||| || || Sbjct 1860511 AAGGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGA 1860452 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || ||||| ||| | | | | |||| || | ||| || Sbjct 1860451 ATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATCGTGTCAGAGCTTTCCACC 1860392 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| || ||||||||||| ||||| |||||||||||| Sbjct 1860391 TCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCATC 1860344 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || || || || | || |||| ||| | ||| || ||||| ||||||||||| Sbjct 1861487 GAAACCACCACGGAGACGGAGGACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTC 1861428 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 | ||| || | || || | |||||| || ||||| ||||| ||||||||||| Sbjct 1861427 CGCCAGTGTGCGACCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGG 1861368 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338 || | | |||||||| || || ||| | || | | || | ||||| || Sbjct 1861367 TGGGATACCTTCCTTGTCTTGAATTTTGGCCTTCACATTGTCAATGGTATCGGAGCTCTC 1861308 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| |||||||| || ||||| | ||| ||||| || || ||||| Sbjct 1861307 CACTTCCAGAGTGATGGTCTTCCCGGTCAAAGTCTTCACGAAAATTTGCAT 1861257 >seq75 Length=6520592 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || |||||||| |||| ||| | || ||| ||||| |||||||| || | | Sbjct 967699 CCACCACGAAGCCTCAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 967640 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | || |||| ||||| ||||| || ||||| || |||| ||||| || ||| Sbjct 967639 AACGTGCGACCGTCTTCCAATTGCTTTCCCGCGAAGATAAGCCTTTGCTGATCCGGGGGA 967580 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGA-TCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| ||||| |||||| | | | |||| |||| ||| || Sbjct 967579 ATTCCTTCCTTGTCCTGGATCTTG-GCTTTAACGTTGTCGATCGTGTCGGAGCTTTCCAC 967521 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||||||||||||||| || || || |||||| Sbjct 967520 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAAATTTGCATC 967472 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||| || || |||| || | |||||| || |||||| Sbjct 2456201 TCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGTCCGTCTTCGAGCTGCTTTCCGGCGAAA 2456260 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | ||||||||||| || | | |||||||| ||||| ||| | || | Sbjct 2456261 ATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTGACATTG 2456320 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| || ||||| || | ||||| || || || || || |||||||| Sbjct 2456321 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTCTTACCCGTTAGGGTTTTCACG 2456380 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 2456381 AAGATCTGCATC 2456392 >seq115 Length=22393718 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 34153 TTCGTCGAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTT 34212 ||| ||| | || || || || | || ||||| || | ||| ||| ||||| ||||| Sbjct 21774135 TTCTTCGCA-CCACCACGGAGACGGAGAACCAGATGAAGAGTTGATTCCTTCTGGATGTT 21774077 Query 34213 GTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTG 34272 |||||| | || ||| |||| || | ||| || || |||||||| | |||||||| Sbjct 21774076 GTAGTCAGCGAGGGTTCGGCCGTCTTCGAGCTGTTTTCCGGCGAAAATCAATCGCTGCTG 21774017 Query 34273 GTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGG 34331 || || | | |||||||| ||| || ||||| | || | | || | || | Sbjct 21774016 ATCCGGTGGGATTCCTTCCTTGTCTTGGATC-TTCGCTTTGACATTGTCGATGGTGTCAG 21773958 Query 34332 TCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||||||| || | ||||| || || || || || |||||||| |||||||||||| Sbjct 21773957 ATGATTCGACCTCGAGTGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 21773899 >seq72 Length=2807273 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || |||| ||| | || ||| ||||| |||||||| || | | Sbjct 227498 CCACCACGAAGCCTGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCCGCC 227557 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| |||| ||||||||||| || ||||| || || | ||||| || || Sbjct 227558 AAGGTACGGCCGTCTTCCAACTGCTTACCGGCGAAGATAAGTCTTTGCTGATCCGGAGGA 227617 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || ||||| ||| | | | | |||| || | ||| || Sbjct 227618 ATCCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATCGTGTCAGAGCTTTCCACC 227677 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||||||||| || || || ||||| |||||| Sbjct 227678 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCATC 227725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071370009600