Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq92 104 2e-17 seq75 102 6e-17 seq139 100 2e-16 seq80 98.7 8e-16 seq101 91.5 1e-13 seq72 89.7 4e-13 >seq92 Length=17487894 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 ||||| |||| ||| || || || || |||||||| ||||| || |||| ||| || | Sbjct 10601044 CTAAGAACCAAGTGGAGAGTCGACTCCTTTTGAATATTGTAATCTGCCAATGTACGACCA 10601103 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 || || | |||||| || ||| |||| ||||||||||||||| || | |||||||| Sbjct 10601104 TCCTCAAGTTGTTTACCGGCAAAGATGAGTCTTTGTTGATCCGGAGGGATCCCTTCCTTG 10601163 Query 18231 TCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289 || ||| | | |||| | | || ||| |||||| | ||| ||| | ||| || Sbjct 10601164 TCTTGAATCT-TAGCTTTAACATTGTCAATAGTGTCTGAGCTCTCAACTTCTAGGGTTAT 10601222 Query 18290 GCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || | ||||| | || || ||||| || ||||| Sbjct 10601223 GGTTGTACCGGTAAGAGTCTTGACAAATATCTGCAT 10601258 Score = 102 bits (112), Expect = 6e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||||||||||||||| || || |||||||| || || | ||| || ||| Sbjct 10600819 AGAACAAGGTGAAGTGTTGATTCCTTCTGGATGTTGTAATCTGCAAGCGTTCGACCATCC 10600878 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||| || || |||| ||||| ||||||||| || | |||||||| || Sbjct 10600879 TCAAGTTGTTTACCTGCGAAGATGAGTCTCTGTTGATCCGGAGGGATCCCTTCCTTGTCT 10600938 Query 18234 GCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | | |||| | | || ||| |||||| | ||| ||| | ||| ||| | Sbjct 10600939 TGAATCT-TAGCTTTAACGTTGTCAATAGTGTCTGAGCTCTCCACTTCTAGGGTAATGGT 10600997 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| ||||| | ||||| ||||| || ||||| Sbjct 10600998 TTTACCGGTGAGGGTTTTCACAAATATCTGCAT 10601030 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 ||||| |||| |||||| ||||| ||||||| |||||||| || |||| ||| || | Sbjct 12099799 CTAAGAACCAAGTGAAGAGTTGACTCTTTTTTGATGTTGTAATCAGCCAATGTACGACCA 12099740 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 || || | |||||| || ||| ||||||||||||||||||| || | ||||| ||| Sbjct 12099739 TCCTCAAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGATCTGGAGGGATTCCTTCTTTA 12099680 Query 18231 TC 18232 || Sbjct 12099679 TC 12099678 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 ||||| |||| ||| || ||||| |||||||| |||||||| || | || ||| || | Sbjct 10601272 CTAAGAACCAAGTGGAGCGTTGACTCTTTTTGGATGTTGTAATCCGACAATGTACGACCA 10601331 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 || || | |||||| || ||| |||||||||||||||| || || | ||||| ||| Sbjct 10601332 TCCTCGAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCTTTA 10601391 Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 || ||| | |||||| | | | ||||| | || ||| | ||| ||| Sbjct 10601392 TCTTGAATCTTAGCCTTGACGTTGTCTATGGTGTCTGAGCTTTCAACTTCTAGGGTTATG 10601451 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || ||||| | || || ||||| |||||||| Sbjct 10601452 GTCTTCCCGGTAAGAGTCTTAACAAAGATTTGCAT 10601486 >seq75 Length=6520592 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || |||| |||||| || ||||| || || |||||||| || ||| Sbjct 967699 CCACCACGAAGCCTCAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 967640 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||| || ||||| ||||||| ||||| |||||| ||| Sbjct 967639 AACGTGCGACCGTCTTCCAATTGCTTTCCCGCGAAGATAAGCCTTTGCTGATCCGGGGGA 967580 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || || | | |||| | | || | | ||||| | || Sbjct 967579 ATTCCTTCCTTGTCCTGGATCT-TGGCTTTAACGTTGTCGATCGTGTCGGAGCTTTCCAC 967521 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | |||||||| | ||||| || ||||||||||| Sbjct 967520 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAAATTTGCAT 967473 >seq139 Length=20634497 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 ||||| |||| ||| || || || || |||||||| ||||| || |||| ||| || | Sbjct 14478269 CTAAGAACCAAGTGCAGAGTCGACTCCTTTTGAATATTGTAATCTGCCAATGTACGACCA 14478328 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 || || | |||||| || ||| ||||||||||| |||||||| || | ||||||||| Sbjct 14478329 TCCTCAAGTTGTTTCCCAGCAAAGATAAGTCTTGGTTGATCCGGAGGGATTCCTTCCTTA 14478388 Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 || || | |||||| | ||| |||||| | ||| || | || ||| Sbjct 14478389 TCTTGGATCTTGGCCTTGACATTATCAATGGTGTCAGAGCTTTCGACCTCTAGTGTTATG 14478448 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || ||||| | || || ||||| |||||||| Sbjct 14478449 GTCTTTCCGGTAAGAGTCTTGACAAAGATTTGCAT 14478483 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||| | |||||||||||||| || |||| ||| || |||| Sbjct 14478500 AGAACCAAGTGGAGAGTTGACTTCTTTTGAATGTTGTAATCTGCCAATGTACGACCATCT 14478559 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||||||| ||| |||| |||||||| || || | | |||||| || || Sbjct 14478560 TCAAGTTGTTTGCCGGCAAAGATCAGTCTTTGCTGGTCTGAAGAAATGCCTTCTTTGTCC 14478619 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | | | || ||||| ||| || | ||| ||| | Sbjct 14478620 TGGATCTTTGCCTTGACGTTTTCCACTGTGTCGGAACTTTCGACCTCTAAGGTTATGGTC 14478679 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTG 18322 ||||| || | || ||||| || ||||| Sbjct 14478680 TTGCCCGTGAGAGTCTTTACGAAGATTTG 14478708 >seq80 Length=21647715 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||||||||| ||||||||||||||||| | || | |||| Sbjct 2366317 AGAACCAAGTGGAGAGTTGATTCTTTCTGAATGTTGTAGTCGGCTAAGGTACGGCCATCT 2366258 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||| || || |||| | |||||| || ||| || | |||||||| || Sbjct 2366257 TCAAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGAGGAATTCCTTCCTTGTCC 2366198 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | | |||||| | ||| |||||| | |||| ||| | || ||| | Sbjct 2366197 TGAATCTTTGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACTTCGAGAGTTATGGTC 2366138 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | |||||| || || | |||||| Sbjct 2366137 TTGCCAGTGAGTGTTTTCACGAATACTTGCAT 2366106 >seq101 Length=14560423 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| || || || || || ||||| ||||||||||| || Sbjct 13329432 CCACCACGAAGACGAAGCACCAAATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCG 13329373 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | |||||| | ||| || || || ||||||||||||| |||||| || Sbjct 13329372 AGAGTTCTTCCATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGA 13329313 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||| | | |||| | | || ||| |||||| | || Sbjct 13329312 ATACCTTCTTTGTCTTGAATCT-TAGCTTTAACGTTGTCAATGGTGTCAGAGCTTTCAAC 13329254 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| |||||| | || ||||| | || || || || ||||||||| Sbjct 13329253 TTCAAGAGTGATGGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCATT 13329205 >seq72 Length=2807273 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | | |||| |||||| ||||| || || ||||||||||| || ||| Sbjct 226814 CCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGCC 226873 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||||||| || || || |||| | |||||| || ||| || Sbjct 226874 AAGGTACGGCCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCCGGTGGG 226933 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || |||| | || ||||| | | | ||||| | ||| Sbjct 226934 ATACCTTCCTTGTCTTGGATTT-TAGCTTTGACATTGTCGATCGTGTCTGAGCTCTCAAC 226992 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||||| ||||||| ||||| || || || || || ||||| Sbjct 226993 TTCCAAGGTGATGGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 227040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343260279200