Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq64 136 5e-27 seq77 84.2 3e-11 >seq64 Length=9524166 Score = 136 bits (150), Expect = 5e-27 Identities = 398/603 (66%), Gaps = 14/603 (2%) Strand=Plus/Minus Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 |||| || |||||||||||||| | || ||||||| || || || || || || Sbjct 404248 ATCAGGCACGCGAAATCGCAGTGTAAGCCTTCGTCTCGCGAGATCAACTCATTGGAGAAG 404189 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 || | ||||||||| || || ||||| |||||||| || || || ||| ||||| Sbjct 404188 GTTAATCCGGGCATGAGACCGCGCTTCTTAAGCCAGAAAATCGAGCAGAAACTACCGGAG 404129 Query 33696 AAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC 33754 |||||||| ||||| || ||| || || || | | | ||| | | | ||| Sbjct 404128 AAGAAGATACCTTCGAC-GCAGGCGAAAGCCACGATACGCTCGGCGAA----GGTCTGAG 404074 Query 33755 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 || || ||||| | ||||| | ||| ||||| || ||||| || || || | Sbjct 404073 ATCCGTCGATCCATGTCATCGCCCACTGGGCTTTCTTCGCGACGCAAGGGATGGTCTCGA 404014 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 |||| |||||||| || | | || || | || || | || || |||| | || | Sbjct 404013 TGGCGCGAAAGAGATGGTCTCTCTCCTTGTTGTCCTTGATGTATGTGTCGAGGAGGAGGC 403954 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 | ||||| || || || ||||| || || || ||||| || ||||||||| | |||| Sbjct 403953 TGTACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAACCGTAGAAAGCACGCGCCT 403894 Query 33931 CGGTAATCTGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 | | | || || || | ||| ||||| || | ||| || || ||||| || Sbjct 403893 CCGAGACTTGAACATC-GGACATGAATCGGGAAGCCAGATTCTCGAGAACGATTCCGTCG 403835 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTT 34048 || || || || || | || ||||| || || | | ||| | | || | || || Sbjct 403834 GATGCGGCGAAGAAAGCGAGCACGTGTTTGATGAAGTGTCGCTCGCCGTCGT-TGAGATT 403776 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108 | |||||| |||| || | ||| ||||| || | |||||||| |||||||| Sbjct 403775 CTCCCAATCGCGACCGTCTTGTGACAAATCGACTTCCTCGGCCGTCCAAAAGGATGCCTC 403716 Query 34109 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATT 34168 ||||| || ||||| | |||||| | | || || |||||||| ||| ||||| | Sbjct 403715 GGCCTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTC 403656 Query 34169 TGG 34171 ||| Sbjct 403655 TGG 403653 >seq77 Length=18658056 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 62754 AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62813 || |||||||| || || | |||||| ||||| |||||||| |||||||| | | | || Sbjct 17992459 AGGATAAACGCATCAGCGAGTCCTTGTACACCGATACCGATTGGTCTATGACGCATGTTC 17992400 Query 62814 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62869 ||| || || | || |||||||| ||| | |||||| || ||||||||||| Sbjct 17992399 GAGGTTCTCGCGGTTTCAACAGGATAATGATTCACATCTATTATCTTATTGAGATT 17992344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816340364800