Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq77 96.9 3e-15 >seq77 Length=18658056 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||| | ||| ||||| | || || | |||||||| ||||| |||||||| ||| Sbjct 17990909 TTGAGCTATTGGTGTTCCTGAATTGAAGAGAGTAGGAGACGCATGAGTGAACCATCTTTG 17990850 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| ||||||| ||| | ||| | ||| | ||||||||| | ||| Sbjct 17990849 AGACATTAAATGGTATGTTTTGATTGCGGAATCAACATCTTCTTTGTGAATACCAACAGA 17990790 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT--ATTATTCTGTTTAAGTAGA 38577 || ||||||||||| ||||| || ||||| | | ||| || || || ||| || Sbjct 17990789 GACTCTCATTAGCATGTGTTGAGGCCTTTCAACAACTTTGCCTTGAACT-TTCAAG-AGG 17990732 Query 38578 TACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 || |||||||| | |||||| | ||||| ||| |||| |||| | |||||| Sbjct 17990731 TATGATTTTTCAAGTGTTTTGAAACCAAAGTAATCATATTCGAAATCACGATCGTA 17990676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468523862950400