Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq77 125 9e-24 >seq77 Length=18658056 Score = 125 bits (138), Expect = 9e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 66209 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 66268 |||| |||||| ||||| | || | ||| || | |||| ||||||||| ||| |||| Sbjct 17991228 TTTGCCTCCTCCTTGATCAACATAACGAGCAGTATCATTAAAAACTCTCAGCATCGGAAC 17991169 Query 66269 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACT 66328 ||| ||||| ||||||||||| || || || || ||||| |||||||||| ||| Sbjct 17991168 AATTCCATTAGATGTACCATTCGTGCCACGAATGTAACTTCCCATTGCACGAATGTTATG 17991109 Query 66329 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 66388 || |||| || ||||| || || |||| || | || || ||| ||||| || Sbjct 17991108 AACCGATACGCCAATTCCACCAGCTGATTTACTTATAACAGCACACTCTTTCAACGTCTC 17991049 Query 66389 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 ||| || || || ||||||||||| |||| || | |||||||||| Sbjct 17991048 ATAAATCCCTTCAATACTATCATCTTTCATACAAATCAAAAAACAGCTA 17991000 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 65547 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 65606 || |||||||| || || | |||||| ||||| |||||||| |||||||| | | | || Sbjct 17992459 AGGATAAACGCATCAGCGAGTCCTTGTACACCGATACCGATTGGTCTATGACGCATGTTC 17992400 Query 65607 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 65662 ||| || || | || |||||||| ||| | |||||| || ||||||||||| Sbjct 17992399 GAGGTTCTCGCGGTTTCAACAGGATAATGATTCACATCTATTATCTTATTGAGATT 17992344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658171483654400