Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq77 116 5e-21 >seq77 Length=18658056 Score = 116 bits (128), Expect = 5e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 80085 TCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 80144 || |||| |||||| ||||| | || | ||| || | |||| ||||||||| ||| || Sbjct 17991231 TCTTTTGCCTCCTCCTTGATCAACATAACGAGCAGTATCATTAAAAACTCTCAGCATCGG 17991172 Query 80145 AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 80204 || ||| ||||| ||||||||||| || || || || ||||| | |||||||| || Sbjct 17991171 AACAATTCCATTAGATGTACCATTCGTGCCACGAATGTAACTTCCCATTGCACGAATGTT 17991112 Query 80205 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 80264 | || |||| || ||||| || || |||| || | || || ||| ||||| Sbjct 17991111 ATGAACCGATACGCCAATTCCACCAGCTGATTTACTTATAACAGCACACTCTTTCAACGT 17991052 Query 80265 ATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| || || || || |||||||| |||| || | |||||||||| Sbjct 17991051 CTCATAAATCCCTTCAATACTATCATCTTTCATACAAATCAAAAAACAGCTA 17991000 Score = 91.5 bits (100), Expect = 2e-13 Identities = 245/372 (66%), Gaps = 2/372 (1%) Strand=Plus/Minus Query 79027 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 79086 || |||||| | ||| |||||| |||||| || || || || || ||||| Sbjct 17992935 TCAGTTAAATCATGAAGAAGATGCTTATTAACCACAACGAACTCGCCGCTTAAGACTCTA 17992876 Query 79087 CGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCA 79146 || | || || || ||||| ||||| | ||||||| ||||| | ||| ||| Sbjct 17992875 CGGCTATATATGTTTGAAGTATACGGTTCAAAACATTCATTGTTTCCAAGAATCTGACTC 17992816 Query 79147 GTTGATGCCGTTGGCATAGGTGCCACCAATAAACTA-TTTCTAAGACCGTATGATCTGAT 79205 ||||| || |||||||| || || || | || | | ||||| | |||| | ||| Sbjct 17992815 GTTGAAGCAGTTGGCATTGGAGCGACGAG-AAGCGAGTTTCTGATTCCGTTCTTTGAGAT 17992757 Query 79206 TTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATA 79265 | ||| ||||||| |||||||||| ||| || || |||||||| | |||| Sbjct 17992756 CATTTCTCTTAGAGAAGACCAATCCCAACGATTCGAAGGAGTTACATTCCACATATCAGG 17992697 Query 79266 TTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTC 79325 ||| || || || ||||| | |||| ||| || || || | ||||||||| | Sbjct 17992696 TTGAAGTATTCCTTTACTCACTGGACTTCCTTGGTAAGTCTCGTATGTACCTTCCTTTAC 17992637 Query 79326 GGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATT 79385 || | || || | || | ||| ||| |||||||||||||| || | ||| || Sbjct 17992636 TGCAATCTCTGAAGATGACTTAAGTGCGTGGTAGTAAATGGTTTCGAATATGTCCTTGTT 17992577 Query 79386 GAGATCTTGTGC 79397 || | ||| || Sbjct 17992576 CAGTTGTTGAGC 17992565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267363462400