Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq47 122 7e-23 seq139 96.9 3e-15 seq75 89.7 4e-13 seq92 87.8 1e-12 seq101 84.2 2e-11 seq115 82.4 6e-11 >seq47 Length=18124089 Score = 122 bits (134), Expect = 7e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 ||||||| | ||| | | |||||||||| || ||||| || | |||||||||| Sbjct 4075163 CGCCTCCTCTCAGACGGAGAACCAAATGGAGCGTCGATTCCTTCTGGATGTTGTAATCGG 4075222 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 | ||| | | | || |||||||| || ||||| ||||||| ||||||||||| | | Sbjct 4075223 CGAGTGTCCTTCCATCCTCCAATTGCTTCCCGGCGAAAATCAGACGCTGTTGATCCGGTG 4075282 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | | ||||| || || |||| | | || || || | | ||| ||| | |||| Sbjct 4075283 GGATTCCTTCCTTATCCTGGATCTTCGCCTTCACATTGTCGATTGTATCGGAGGATTCGA 4075342 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 | |||| ||||| || ||||||||||| |||||||| || || |||||||| Sbjct 4075343 CCTCTAGGGTTATTGTCTTTCCGGTTAGGGTTTTCACGAATATCTGCATTTT 4075394 >seq139 Length=20634497 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| ||| || |||||| | |||||||| | ||||||||| | || || Sbjct 14478503 ACCAAGTGGAGAGTTGACTTCTTTTGAATGTTGTAATCTGCCAATGTACGACCATCTTCA 14478562 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||||||||||||||| |||| || || || || | | | |||||||| || | Sbjct 14478563 AGTTGTTTGCCGGCAAAGATCAGTCTTTGCTGGTCTGAAGAAATGCCTTCTTTGTCCTGG 14478622 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| | ||||| | | ||||||||| | ||||| |||| ||||| || || Sbjct 14478623 ATCTTTGCCTTGACGTTTTCCACTGTGTCGGAACTTTCGACCTCTAAGGTTATGGTCTTG 14478682 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTG 43106 || || ||||| || || || ||||| Sbjct 14478683 CCCGTGAGAGTCTTTACGAAGATTTG 14478708 >seq75 Length=6520592 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | |||||| || | || |||||| || | ||||| || | | Sbjct 967927 CCTCCACGGAGACGAAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCCGCC 967868 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || |||| || | |||||| ||||| || ||||| | || || || | || Sbjct 967867 AAGGTTCGGCCGTCCTCGAGTTGTTTACCGGCGAAGATCAACCTTTGCTGGTCCGGTGGA 967808 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| || || || |||| ||||||| || | | ||||| ||| ||| || Sbjct 967807 ATACCCTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAG-AGCTCTCCAC 967749 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||| || ||||||||||| ||||| || || |||||||| Sbjct 967748 CTCAAGGGTTATTGTCTTTCCGGTTAGGGTTTTGACGAATATTTGCAT 967701 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||||| |||| | || ||| |||| || | || || ||||| || Sbjct 2456200 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGTCCGTCTTCGAGCTGCTTTCCGGCGAA 2456259 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||||||||||| || || | || | ||||| || || |||| | | ||||| | Sbjct 2456260 AATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTGACATT 2456319 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | |||||| | |||||| || | || || || || || ||||| |||||||| Sbjct 2456320 GTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTCTTACCCGTTAGGGTTTTCAC 2456379 Query 43098 AAAAATTTGCATTTT 43112 || || ||||| || Sbjct 2456380 GAAGATCTGCATCTT 2456394 >seq92 Length=17487894 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| || ||| ||||| | |||||||| ||||||||||| | || || Sbjct 10601278 ACCAAGTGGAGCGTTGACTCTTTTTGGATGTTGTAATCCGACAATGTACGACCATCCTCG 10601337 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | |||||| || ||||| || | || ||||| || | || | |||||||| || Sbjct 10601338 AGTTGTTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCTTTATCTTGA 10601397 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTT 43079 ||| | ||||| || | | ||||| ||| || || |||| ||||| || || Sbjct 10601398 ATCTTAGCCTTGACGTTGTCTATGGTGTC-TGAGCTTTCAACTTCTAGGGTTATGGTCTT 10601456 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| ||||| || ||||| |||||||| Sbjct 10601457 CCCGGTAAGAGTCTTAACAAAGATTTGCAT 10601486 >seq101 Length=14560423 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||| | || ||||| || | |||||||||| || ||||| | || ||| Sbjct 13329186 ACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCGGCTAAAGTACGGCCATCTTCC 13329127 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 || ||||| ||||| || ||||||| || ||||| | || | ||||| || || | Sbjct 13329126 AACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTGTCTTGG 13329067 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTT 43079 ||| | || || || | | ||||| ||| |||||| || | || || || || Sbjct 13329066 ATCTTTGCCTTAACGTTGTCGATGGTGTCAG-AGCTCTCGACCTCGAGAGTGATGGTCTT 13329008 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || ||||||||||| || |||||||| Sbjct 13329007 GCCAGTGAGAGTTTTCACGAAGATTTGCAT 13328978 >seq115 Length=22393718 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||| ||| | ||| ||||| || | ||||| || | Sbjct 21774126 CCACCACGGAGACGGAGAACCAGATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCAGCG 21774067 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | ||||| ||||| |||||||||||||| ||||| | || Sbjct 21774066 AGGGTTCGGCCGTCTTCGAGCTGTTTTCCGGCGAAAATCAATCGCTGCTGATCCGGTGGG 21774007 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | ||||||| || | | ||||| | ||||| Sbjct 21774006 ATTCCTTCCTTGTCTTGGATCTTCGCTTTGACATTGTCGATGGTGTCAGATGATTCGACC 21773947 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || ||||| |||||||| || || ||||| || Sbjct 21773946 TCGAGTGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 21773897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381368856329280