Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq64 154 2e-32 seq77 111 2e-19 >seq64 Length=9524166 Score = 154 bits (170), Expect = 2e-32 Identities = 402/603 (67%), Gaps = 14/603 (2%) Strand=Plus/Minus Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118 |||| || |||||||||||||| | || || |||| || || || ||||| || Sbjct 404248 ATCAGGCACGCGAAATCGCAGTGTAAGCCTTCGTCTCGCGAGATCAACTCATTGGAGAAG 404189 Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGA 42177 || | ||||||||| || || ||||| |||||||| || || || ||| | | || || Sbjct 404188 GTTAATCCGGGCATGAGACCGCGCTTCTTAAGCCAGAAAATCGA-GCAGAAACTACCGGA 404130 Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 42237 |||||||| ||||| || || || || | | | ||| | | | ||| Sbjct 404129 GAAGAAGATACCTTCGACGCAGGCGAAAGCCACGATACGCTCGGCGAA----GGTCTGAG 404074 Query 42238 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 || || ||||| | ||||| | ||| ||||| || ||||| || || || | Sbjct 404073 ATCCGTCGATCCATGTCATCGCCCACTGGGCTTTCTTCGCGACGCAAGGGATGGTCTCGA 404014 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 |||| |||||||| || | | || || | || || | ||||| |||| | || | Sbjct 404013 TGGCGCGAAAGAGATGGTCTCTCTCCTTGTTGTCCTTGATGTATGTGTCGAGGAGGAGGC 403954 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 | ||||| || || || ||||| || || || ||||| || ||||||||| | |||| Sbjct 403953 TGTACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAACCGTAGAAAGCACGCGCCT 403894 Query 42414 CGGTAACCTGTACTTCTGTACAA-AATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 | | || || || || | ||| ||||| ||| | ||| ||| || |||||||| Sbjct 403893 CCGAGACTTGAACATCGG-ACATGAATCGGGAAGCCAGATTCTCGAGAACGATTCCGTCG 403835 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT-TT 42531 || || || || || | || ||||| || || | | ||| ||| ||| | || Sbjct 403834 GATGCGGCGAAGAAAGCGAGCACGTGTTTGATGAAGTGTCGCTCG-CCGTCGTTGAGATT 403776 Query 42532 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTC 42591 | |||||| |||| || | ||| ||||| || |||||||||| ||||| || Sbjct 403775 CTCCCAATCGCGACCGTCTTGTGACAAATCGACTTCCTCGGCCGTCCAAAAGGATGCCTC 403716 Query 42592 TGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATT 42651 ||||| || ||||| | |||||| | | || ||||||||||| ||| ||||| | Sbjct 403715 GGCCTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTC 403656 Query 42652 TGG 42654 ||| Sbjct 403655 TGG 403653 >seq77 Length=18658056 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 72171 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 72230 |||| |||||| ||||| | || | ||| || | |||| ||||||||| ||| |||| Sbjct 17991228 TTTGCCTCCTCCTTGATCAACATAACGAGCAGTATCATTAAAAACTCTCAGCATCGGAAC 17991169 Query 72231 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCT 72290 ||| ||||| |||| |||||| || || || || ||||| | |||||||| || Sbjct 17991168 AATTCCATTAGATGTACCATTCGTGCCACGAATGTAACTTCCCATTGCACGAATGTTATG 17991109 Query 72291 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 72350 || |||| || ||||| || || |||| || | || || ||| ||||| || Sbjct 17991108 AACCGATACGCCAATTCCACCAGCTGATTTACTTATAACAGCACACTCTTTCAACGTCTC 17991049 Query 72351 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 ||| || || || ||||||||||| |||| || | |||||||||| Sbjct 17991048 ATAAATCCCTTCAATACTATCATCTTTCATACAAATCAAAAAACAGCTA 17991000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137857721600