Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq139 104 2e-17 seq101 104 2e-17 seq92 96.9 4e-15 seq72 95.1 1e-14 seq75 91.5 1e-13 >seq139 Length=20634497 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GC 143015 ||| || || | ||| | || | ||||| ||||| || ||||| ||||||||||| || Sbjct 11242465 GCCACCACGAAGACGAAGGACAAGATGAAGCGTAGACTCCTTTTGGATGTTGTAATCAGC 11242406 Query 143016 TCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | || | ||||| |||||||| || ||| |||||| | ||||||||| |||| Sbjct 11242405 TAAG-GTCCGGCCATCTTCTAGTTGTTTTCCGGCAAAGATCAATCTTTGCTGATCCGGAG 11242347 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||| ||||| || ||| || | | || | ||||| | | || | Sbjct 11242346 GAATCCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAA 11242287 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || | ||| | ||||| || |||| |||||| |||||||||||||| Sbjct 11242286 CCTCGAGAGTGATGGTCTTTCCAGTCAGTGTTTTCACGAATATTTGCAT 11242238 Score = 102 bits (112), Expect = 8e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||||||| ||| || || | || || | ||||| ||||||||||| | Sbjct 14478485 CCACCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTTCTTTTGAATGTTGTAATCTGCC 14478544 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| |||||||| || ||| ||||||| | |||||| || | || Sbjct 14478545 AATGTACGACCATCTTCAAGTTGTTTGCCGGCAAAGATCAGTCTTTGCTGGTCTGAAGAA 14478604 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| || ||| || | | |||||| ||||| | ||| || Sbjct 14478605 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACGTTTTCCACTGTGTCGGAACTTTCGACC 14478664 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTG 143181 || | || | |||||||| || | || |||||||| ||||| Sbjct 14478665 TCTAAGGTTATGGTCTTGCCCGTGAGAGTCTTTACGAAGATTTG 14478708 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| | ||||| || || ||||| || ||||||||||| | Sbjct 14477802 CCACCACGGAGACGGAGAACAAGATGAAGAGTTGACTCTTTCTGAATGTTGTAATCCGCC 14477861 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | | || || ||||| ||||| || ||| |||| || | || || || ||||| Sbjct 14477862 AAAGCGCGACCATCCTCGAGCTGTTTTCCGGCAAAGATTAGTCTCTGTTGGTCCGGAGGG 14477921 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| || |||| | || | ||| |||| | || || Sbjct 14477922 ATCCCTTCTTTGTCCTGAATCTTCGCCTTTACATTGTCAATCGTATCCGAGCTCTCCACC 14477981 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| || ||||| || || || ||||| ||||| Sbjct 14477982 TCAAGTGTTATGGTCTTACCCGTCAACGTCTTGACAAATATCTGCAT 14478028 >seq101 Length=14560423 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||| | || || || ||||| |||||||| || Sbjct 13329432 CCACCACGAAGACGAAGCACCAAATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCG 13329373 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| ||||| |||||||| |||| || | ||||||||| ||||| Sbjct 13329372 AGAGTTCTTCCATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGA 13329313 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| || ||| | | || | ||||| | | ||| ||| Sbjct 13329312 ATACCTTCTTTGTCTTGAATCTTAGCTTTAACGTTGTCAATGGTGTCAGAGCTTTCAACT 13329253 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| ||||| | || || ||||| |||||||| Sbjct 13329252 TCAAGAGTGATGGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 13329206 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || ||| | || ||||||| |||||||| || || |||||||||||| Sbjct 13329204 CCTCCTCTTAGACGGAGGACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCGGCT 13329145 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | ||||| || || |||||| | ||||||||| ||||| Sbjct 13329144 AAAGTACGGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCCGGAGGA 13329085 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || ||| || | | || | ||||| | | || || Sbjct 13329084 ATTCCTTCCTTGTCTTGGATCTTTGCCTTAACGTTGTCGATGGTGTCAGAGCTCTCGACC 13329025 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||||| || | ||||| ||||| |||||||| Sbjct 13329024 TCGAGAGTGATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 13328978 >seq92 Length=17487894 Score = 96.9 bits (106), Expect = 4e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| || |||| || || ||||||| ||||||||||| || ||| | || || Sbjct 12099794 AACCAAGTGAAGAGTTGACTCTTTTTTGATGTTGTAATCAGCCAATGTACGACCATCCTC 12099735 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||||||||||||| |||| || | ||| ||||| ||||| || |||||||| || Sbjct 12099734 AAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGATCTGGAGGGATTCCTTCTTTATCTTG 12099675 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| || |||| | || | ||||| | | ||| ||||| | || | ||||| Sbjct 12099674 AATCTTAGCCTTTACGTTGTCTATTGTGTCTGAGCTTTCAACTTCTAAGGTAATGGTCTT 12099615 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | || || ||||| ||||||||| Sbjct 12099614 CCCTGTAAGAGTCTTAACGAAGATTTGCATA 12099584 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| || || | || || |||||||| ||||||||||| || ||| | || || Sbjct 10601277 AACCAAGTGGAGCGTTGACTCTTTTTGGATGTTGTAATCCGACAATGTACGACCATCCTC 10601336 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 |||||||||||||||| |||| || | ||| || || ||||| || |||||||| || Sbjct 10601337 GAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCTTTATCTTG 10601396 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| || || | | || | ||||| | | ||| ||||| | || | ||||| Sbjct 10601397 AATCTTAGCCTTGACGTTGTCTATGGTGTCTGAGCTTTCAACTTCTAGGGTTATGGTCTT 10601456 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| | || || || || ||||||||| Sbjct 10601457 CCCGGTAAGAGTCTTAACAAAGATTTGCATA 10601487 >seq72 Length=2807273 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| |||||| || || |||| || || || || || ||||| || || | Sbjct 226586 CCACCACGTAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGCC 226645 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || |||||||| || |||||| |||| ||||| |||||||| ||||| Sbjct 226646 AAGGTGCGACCATCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGG 226705 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| || || | | || | ||||| | | || || Sbjct 226706 ATACCTTCCTTATCCTGAATCTTGGCCTTCACGTTGTCGATTGTGTCTGAGCTCTCCACC 226765 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||||||||| | ||| || ||||| || ||||| Sbjct 226766 TCCAGAGTAATGGTCTTGCCGGTAAGTGTCTTGACGAAAATCTGCAT 226812 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||||| || || || || || |||||||| ||| Sbjct 226358 CCACCACGGAGACGGAGGACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCT 226417 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || |||||||| || ||||| |||| ||||| ||||| || || || Sbjct 226418 AAGGTGCGACCATCCTCGAGTTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCCGGTGGG 226477 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || || | | || | ||||||| | || ||| Sbjct 226478 ATACCTTCTTTGTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCCGAGCTCTCCACT 226537 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||| || ||||| || || ||||| || |||||| Sbjct 226538 TCCAAAGTGATCGTCTTCCCTGTCAAAGTCTTAACGAAAATCTGCATA 226585 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | |||||| || || |||| || || || || || ||||||||||| Sbjct 226813 GCCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGC 226872 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | |||||| | ||| || || || |||||| | |||||| || || || Sbjct 226873 CAAGGTACGGCCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCCGGTGG 226932 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||||| ||| | | || | |||||| | | || || Sbjct 226933 GATACCTTCCTTGTCTTGGATTTTAGCTTTGACATTGTCGATCGTGTCTGAGCTCTCAAC 226992 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | || | || ||||| ||||| || || ||||| || |||||| Sbjct 226993 TTCCAAGGTGATGGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCATA 227041 >seq75 Length=6520592 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 || ||| || |||| || ||||| || || ||||||||||| || |||| ||| Sbjct 967685 CAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCCAACGTGCGACCGTC 967626 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | ||| || || || |||| || | ||||||||| || || || ||||| ||||| Sbjct 967625 TTCCAATTGCTTTCCCGCGAAGATAAGCCTTTGCTGATCCGGGGGAATTCCTTCCTTGTC 967566 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 || || ||| | | || | |||||| | | ||| || || | || | || Sbjct 967565 CTGGATCTTGGCTTTAACGTTGTCGATCGTGTCGGAGCTTTCCACCTCGAGGGTGATGGT 967506 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||| | ||||| ||||| |||||||| Sbjct 967505 CTTGCCGGTGAGAGTTTTAACGAAAATTTGCAT 967473 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || || |||| || || || || || |||||||| || | Sbjct 967927 CCTCCACGGAGACGAAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCCGCC 967868 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||| |||||||||||||| || |||||| | |||||| || || || Sbjct 967867 AAGGTTCGGCCGTCCTCGAGTTGTTTACCGGCGAAGATCAACCTTTGCTGGTCCGGTGGA 967808 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| || || ||| | | || | ||||| | | || || Sbjct 967807 ATACCCTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCCACC 967748 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | ||||| ||||| | ||||| ||||||||||||||| Sbjct 967747 TCAAGGGTTATTGTCTTTCCGGTTAGGGTTTTGACGAATATTTGCATA 967700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507013385971200