Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq64 170 3e-37 >seq64 Length=9524166 Score = 170 bits (188), Expect = 3e-37 Identities = 382/560 (68%), Gaps = 18/560 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| |||||||| ||||| |||| ||||||||||||| ||| || |||||| || Sbjct 403692 ATCTGGGAGATGTACAAGAAGGCCGAGGCATCCTTTTGGACGGCCGAGGAAGTCGATTTG 403751 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || | ||| ||||||||||| || | | || |||||| | || || Sbjct 403752 TCACAAGACGGTCGCGATTGGGAGAATC---TCAACGACGGCGAGCGACACTTCATCAAA 403808 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | || ||||| |||| ||||| |||||||| ||| |||||| | ||| Sbjct 403809 CACGTGCTCGCTTTCTTCGCCGCATCCGACGGAATCGTTCTCGAGAATCTGGCTTCCCGA 403868 Query 125199 TTC-TCTCAAGAGTTGACCATTC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATG 125255 ||| | || ||| | | || | |||| | |||||||| ||||| ||||| ||| | Sbjct 403869 TTCATGTCCGATGTT--CAAGTCTCGGAGGCG-CGTGCTTTCTACGGTTTCCAGATCGCG 403925 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 || |||||| | ||||| || |||||| || | |||| |||| || | | Sbjct 403926 ATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGACACATACA-TCAAGGACAA 403984 Query 125316 CAACG-TAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 ||| | | | || |||||| ||| ||||| || | || | | || || || Sbjct 403985 CAAGGAGAGAGACCATCTCTTTCGCGCCATCGAGACCATCCCTTGCGTCGCGAAGAAAGC 404044 Query 125375 TCAATGGGTGATTCGGTGGATCGA-TGACGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433 || |||| ||| |||||||| || || ||| |||||| | | |||| Sbjct 404045 CCAGTGGGCGATGACATGGATCGACGGATCTCAGACCTT----CGCCGAGCGTATCGTGG 404100 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGCTC 125492 | |||||| ||| || || |||||||| || |||||||| ||| | || || ||||| Sbjct 404101 CTTTCGCCTGCGTCGAAGGTATCTTCTTCTCCGGTAGTTTCTGC-TCGATTTTCTGGCTT 404159 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 ||||||||||| |||||||||||| | || | || ||||| || || |||||||| Sbjct 404160 AAGAAGCGCGGTCTCATGCCCGGATTAACCTTCTCCAATGAGTTGATCTCGCGAGACGAA 404219 Query 125553 GGCCTACACTGTGACTTTGC 125572 ||| ||||||| || || || Sbjct 404220 GGCTTACACTGCGATTTCGC 404239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057717881600