Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq92 107 2e-18 seq80 100 2e-16 seq139 89.7 4e-13 seq101 89.7 4e-13 seq126 82.4 6e-11 >seq92 Length=17487894 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| |||||| | |||| ||| | || ||||||||||||||||||||||| ||| Sbjct 10601032 CCACCTCTCAACCTAAGAACCAAGTGGAGAGTCGACTCCTTTTGAATATTGTAATCTGCC 10601091 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | ||||| || |||||||| ||| | || ||||| || |||||| || Sbjct 10601092 AATGTACGACCATCCTCAAGTTGTTTACCGGCAAAGATGAGTCTTTGTTGATCCGGAGGG 10601151 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| ||| || ||| || | | | | ||| || ||| | Sbjct 10601152 ATCCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAATAGTGTCTGAGCTCTCAACT 10601211 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| |||||| |||| || | ||| |||||||| || ||||| Sbjct 10601212 TCTAGGGTTATGGTTGTACCGGTAAGAGTCTTGACAAATATCTGCAT 10601258 >seq80 Length=21647715 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||||||||||||||||||||| || | ||| | ||||| || || || Sbjct 2366530 GTAGACTCCTTTTGAATATTGTAATCAGCGAGTGTGCGACCATCCTCTCATTGCTTTCCA 2366471 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | |||||||||||||||||| || | || |||||||| ||| || ||| Sbjct 2366470 GCAAAGATAAGTCTCTGCTGATCCGGAGGGATTCCTTCTTTGTCCTGAATCTTAGCTTTG 2366411 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | ||||| | || ||| | || |||||||| || |||| ||| Sbjct 2366410 ACATTGTCAATGGTATCAGAACTTTCAACTTCTAGTGTGATGGTTTTGCCAGTTAGAGTC 2366351 Query 19025 TTGACAAAAATTTGCATT 19042 |||||||| ||||||||| Sbjct 2366350 TTGACAAAGATTTGCATT 2366333 >seq139 Length=20634497 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| |||||| | |||| ||||| || ||||||||||||||||||||||| ||| Sbjct 14478257 CCACCTCTCAACCTAAGAACCAAGTGCAGAGTCGACTCCTTTTGAATATTGTAATCTGCC 14478316 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | ||| | ||||| || ||||| || ||| | |||||||| | |||||| Sbjct 14478317 AATGTACGACCATCCTCAAGTTGTTTCCCAGCAAAGATAAGTCTTGGTTGATCC 14478370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||| || ||||| ||||||||||||| | | ||||| |||||||| || Sbjct 14477832 GTTGACTCTTTCTGAATGTTGTAATCCGCCAAAGCGCGACCATCCTCGAGCTGTTTTCCG 14477891 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || |||||||| || ||| || | || |||||||| ||| ||| ||| Sbjct 14477892 GCAAAGATTAGTCTCTGTTGGTCCGGAGGGATCCCTTCTTTGTCCTGAATCTTCGCCTTT 14477951 Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | | | ||||| | || |||| || | || ||||| ||||| || || || Sbjct 14477952 ACATTGTCAATCGTATC-CGAGCTCTCCACCTCAAGTGTTATGGTCTTACCCGTCAACGT 14478010 Query 19024 TTTGACAAAAATTTGCAT 19041 |||||||| || ||||| Sbjct 14478011 CTTGACAAATATCTGCAT 14478028 >seq101 Length=14560423 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||| | ||||| ||||||||||| || |||||||||||||||| || | ||| Sbjct 13329873 AACACAAGATGCAATGTAGACTCCTTCTGGATATTGTAATCCGCCAAAGTCCGACCATCC 13329814 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 || |||||||| || || | |||||||||||||| ||| || | ||||| ||||| Sbjct 13329813 TCAAGCTGTTTTCCGGCGAAGATAAGTCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTC 13329755 >seq126 Length=8766530 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||| |||||||| ||||| || | || | ||||| ||||||||||| Sbjct 5178016 GTTGATTCCTTCTGAATATTATAATCTGCAAGAGTGCGACCATCCTCAAGCTGTTTACCA 5178075 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || |||||||| || ||| || | || || ||||| ||| ||| || Sbjct 5178076 GCGAAGATGAGTCTCTGTTGGTCCGGAGGGATTCCTTCCTTGTCTTGAATCTTCGCCTTG 5178135 Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | | | || || | || ||| ||| | |||||| |||||||| |||| || Sbjct 5178136 ACGTTGTCAATCGTGTC-CGAGCTCTCAACTTCTAAGGTAATTGTTTTACCAGTTAGGGT 5178194 Query 19024 TTTGACAAAAATTTGCATT 19042 ||| ||||| ||||||||| Sbjct 5178195 TTTCACAAATATTTGCATT 5178213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414571991583040