Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq126 93.3 3e-14 seq75 89.7 3e-13 seq72 86.0 4e-12 >seq126 Length=8766530 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| || | ||||| || | ||||| || ||||| |||||||||||| Sbjct 5178441 ACCACCTCTTAAACGTAGAACCAAGTGGAGAGTCGATTCCTTTTGGATATTGTAATCACC 5178500 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | || || || || || || || |||||| || | || ||||| | || Sbjct 5178501 CAATGTACGTCCATCTTCTAACTGTTTCCCTGCAAATATCAATCTCTGTTGGTCTGAAGG 5178560 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || |||||||| || | | | || ||| || | | || ||||||| | || Sbjct 5178561 AATTCCTTCTTTCTCCTGGATTTTAGC---TTTGACGTTGTCAACCGTGTCGGAGCTTTC 5178617 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| |||| ||||| || || || |||||||| || ||||| |||||||| Sbjct 5178618 AACCTCCAATGTTATGGTCTTGCCTGTAAGAGTCTTCACGAAGATTTGCAT 5178668 >seq75 Length=6520592 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || || || || || || |||||||||| ||| || | ||| ||| Sbjct 967681 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCCAACGTGCGACCGTCTTCC 967622 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||||||||| || || | | |||||| |||| ||| || ||||| || || Sbjct 967621 AATTGCTTTCCCGCGAAGATAAGCCTTTGCTGATCCGGGGGAATTCCTTCCTTGTCCTGG 967562 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || | | ||||||||| | || || || || || || || || Sbjct 967561 ATCTTGGCTTTAACGTTGTCGATCGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTCTTG 967502 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || |||||||| |||||||||||||| Sbjct 967501 CCGGTGAGAGTTTTAACGAAAATTTGCAT 967473 >seq72 Length=2807273 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | || ||||||||||| || | |||||||| || || || || || |||| Sbjct 226585 ACCACCACGTAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGC 226644 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| || | || || | |||||||||| ||| || | ||| ||||| |||| || Sbjct 226645 CAAGGTGCGACCATCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGG 226704 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || ||||| || || |||| ||| || || | | || ||||| | | Sbjct 226705 GATACCTTCCTTATCCTGAATCTTGGCC---TTCACGTTGTCGATTGTGTCTGAGCTCTC 226761 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || |||||||| || || || || ||||| || || |||||||| |||||| Sbjct 226762 CACCTCCAGAGTAATGGTCTTGCCGGTAAGTGTCTTGACGAAAATCTGCATG 226813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318776978383680