Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq92 105 5e-18 seq101 89.7 4e-13 seq139 87.8 1e-12 seq126 87.8 1e-12 >seq92 Length=17487894 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||||||| || | ||||| || || || ||| ||||||||||| ||||| Sbjct 10601031 ACCACCTCTCAACCTAAGAACCAAGTGGAGAGTCGACTCCTTTTGAATATTGTAATCTGC 10601090 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| || | |||||| || ||||| || | | ||| || ||| |||| Sbjct 10601091 CAATGTACGACCATCCTCAAGTTGTTTACCGGCAAAGATGAGTCTTTGTTGATCCGGAGG 10601150 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| ||| || ||| || | ||| ||| |||| ||| || Sbjct 10601151 GATCCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAATAGTGTCTGAGCTCTCAAC 10601210 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||| ||||||| | |||||| |||||||| ||||| Sbjct 10601211 TTCTAGGGTTATGGTTGTACCGGTAAGAGTCTTGACAAATATCTGCAT 10601258 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||||||| || | ||||| || ||||| ||||||||| || || ||||| Sbjct 10601259 ACCACCTCTCAACCTAAGAACCAAGTGGAGCGTTGACTCTTTTTGGATGTTGTAATCCGA 10601318 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| || | |||||| || ||||| || | | ||| ||||| |||| Sbjct 10601319 CAATGTACGACCATCCTCGAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGAGG 10601378 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||||||| ||| || ||||| | | | || |||| || || Sbjct 10601379 GATTCCTTCTTTATCTTGAATCTTAGCCTTGACGTTGTCTATGGTGTCTGAGCTTTCAAC 10601438 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || ||||| | |||||| ||||| |||||||| Sbjct 10601439 TTCTAGGGTTATGGTCTTCCCGGTAAGAGTCTTAACAAAGATTTGCAT 10601486 >seq101 Length=14560423 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||||||||| || || |||||| || ||||| ||||| || || |||| Sbjct 13330101 AACACCAAATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCCAAGGTCCGACCATCC 13330042 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | |||||||| || ||||||| | ||||||||| | || | ||||| || || Sbjct 13330041 TCAAGCTGTTTTCCGGCGAATATCAGTCTCTGCTGGTCCGGTGGGATCCCTTCCTTGTCC 13329982 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| || ||||| || ||| || |||| ||| || || | ||||| || Sbjct 13329981 TGAATCTTAGCCTTGACATTATCAATCGTGTCTGAGCTCTCAACCTCCAAGGTAATAGTC 13329922 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || || ||||||||||| || ||||| Sbjct 13329921 TTACCTGTCAATGTCTTCACAAAGATCTGCAT 13329890 >seq139 Length=20634497 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||||||| || | ||||| || || || ||| ||||||||||| ||||| Sbjct 14478256 ACCACCTCTCAACCTAAGAACCAAGTGCAGAGTCGACTCCTTTTGAATATTGTAATCTGC 14478315 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| || | |||||| || ||||| || | | | | || ||| |||| Sbjct 14478316 CAATGTACGACCATCCTCAAGTTGTTTCCCAGCAAAGATAAGTCTTGGTTGATCCGGAGG 14478375 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| |||||| || || ||||| || ||| || || | || || Sbjct 14478376 GATTCCTTCCTTATCTTGGATCTTGGCCTTGACATTATCAATGGTGTCAGAGCTTTCGAC 14478435 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || ||||| | |||||| ||||| |||||||| Sbjct 14478436 CTCTAGTGTTATGGTCTTTCCGGTAAGAGTCTTGACAAAGATTTGCAT 14478483 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||||||||| || ||| |||||| || ||||| |||||| | || |||| Sbjct 11242677 AACACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAATCGGCAAGCGTGCGACCATCT 11242618 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | || || || || ||||| | | ||||||||| |||| | || ||||| || Sbjct 11242617 TCAAGCTGCTTACCAGCGAATATAAGTCTTTGCTGGTCTGGAGGGATTCCCTCTTTGTCC 11242558 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || || ||| || || | | || |||| ||| || || | || || ||| Sbjct 11242557 TGGATCTTGGCTTTCACATTATCGATGGTGTCTGAGCTCTCAACCTCCAAGGTGATAGTT 11242498 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| || | |||||||||||| ||||||||| Sbjct 11242497 TTACCAGTCAGAGTCTTCACAAAGATTTGCATG 11242465 >seq126 Length=8766530 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| || | || ||||| || || || || ||||| ||||| ||||| Sbjct 5178441 ACCACCTCTTAAACGTAGAACCAAGTGGAGAGTCGATTCCTTTTGGATATTGTAATCACC 5178500 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| || || ||||| |||||||||||||| | || ||||| ||| Sbjct 5178501 CAATGTACGTCCATCTTCTAACTGTTTCCCTGCAAATATCAATCTCTGTTGGTCTGAAGG 5178560 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| || ||||| |||||| | |||| || || | || || Sbjct 5178561 AATTCCTTCTTTCTCCTGGATTTTAGCTTTGACGTTGTCAACCGTGTCGGAGCTTTCAAC 5178620 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || || | ||||||||| || |||||||| Sbjct 5178621 CTCCAATGTTATGGTCTTGCCTGTAAGAGTCTTCACGAAGATTTGCAT 5178668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354776908183680