Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq75 89.7 4e-13 seq92 82.4 6e-11 >seq75 Length=6520592 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | ||||| ||||| || || || ||||| || || ||||||||||| || Sbjct 967699 CCACCACGAAGCCTCAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 967640 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || | ||||||||||| || ||||| | |||||||| || ||||| ||| Sbjct 967639 AACGTGCGACCGTCTTCCAATTGCTTTCCCGCGAAGATAAGCCTTTGCTGATCCGGGGGA 967580 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| ||||| || || ||| || | | | | | ||| |||| Sbjct 967579 ATTCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCGATCGTGTCGGAGCTTTCCACC 967520 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| ||||| |||||||| | ||||| || ||||||||||| Sbjct 967519 TCGAGGGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAAATTTGCAT 967473 >seq92 Length=17487894 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || ||||| ||||| || || ||||||||||| | | ||| | ||| || | |||| Sbjct 10600828 TGAAGTGTTGATTCCTTCTGGATGTTGTAATCTGCAAGCGTTCGACCATCCTCAAGTTGT 10600887 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || || | || || ||||||||||| || | ||||| ||||| ||| || Sbjct 10600888 TTACCTGCGAAGATGAGTCTCTGTTGATCCGGAGGGATCCCTTCCTTGTCTTGAATCTTA 10600947 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 ||| || | | ||| || || || | ||| ||| | |||||||||||| ||||| Sbjct 10600948 GCTTTAACGTTGTCAATAGTGTC-TGAGCTCTCCACTTCTAGGGTAATGGTTTTACCGGT 10601006 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 | ||||| ||||| || ||||| Sbjct 10601007 GAGGGTTTTCACAAATATCTGCAT 10601030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419586381804960