Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq101 95.1 1e-14 seq115 91.5 1e-13 seq75 87.8 2e-12 seq47 87.8 2e-12 seq72 84.2 2e-11 seq139 82.4 6e-11 >seq101 Length=14560423 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || |||| | || | ||||| ||||||||||| || | Sbjct 1861448 CTCCTTCTGGATGTTGTAGTCCGCCAGTGTGCGACCATCCTCGAGCTGCTTACCAGCGAA 1861389 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||| ||| || | || ||||||||| |||||| ||| | | Sbjct 1861388 GATGAGACGCTGCTGGTCCGGTGGGATACCTTCCTTGTCTTGAATTTTGGCCTTCACATT 1861329 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | |||||||||| |||| || | || ||||| || ||||| | ||| ||||| Sbjct 1861328 GTCAATGGTATCGGAGCTCTCCACTTCCAGAGTGATGGTCTTCCCGGTCAAAGTCTTCAC 1861269 Query 48715 AAAAATCTGCAT 48726 ||||| ||||| Sbjct 1861268 GAAAATTTGCAT 1861257 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||||||| ||| ||||| ||||||||||| ||||| || | ||||| ||||| Sbjct 13329636 TGAAGTGTGGACTCTTTTTGGATGTTGTAATCCGCCAAGGTCCGACCATCCTCGAGCTGT 13329577 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | | |||||| ||| || | | ||||||||| ||| ||| Sbjct 13329576 TTTCCGGCGAATATGAGTCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGAATCTTC 13329517 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | ||||| || | |||| ||| | ||||| ||||| |||||| Sbjct 13329516 GCCTTCACATTATCAATGGTGTCTGAGCTCTCCACCTCCAAGGTTATTGTTTTTCCGGTG 13329457 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || ||||| || ||||| Sbjct 13329456 AGTGTCTTGACAAAGATTTGCAT 13329434 >seq115 Length=22393718 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || ||||| || |||||||| ||||| | ||| |||| || ||||| Sbjct 21774103 ATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCGGCCGTCTTCGAGCTG 21774044 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 || ||| || |||| || |||||||||||| || | | ||||||||| || || Sbjct 21774043 TTTTCCGGCGAAAATCAATCGCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 21773984 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | |||| | | ||||| || | || || ||||| ||| || || || || || Sbjct 21773983 CGCTTTGACATTGTCGATGGTGTCAGATGATTCGACCTCGAGTGTGATTGTCTTCCCCGT 21773924 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 || |||||||| || ||||||||| Sbjct 21773923 TAGGGTTTTCACGAAGATCTGCATC 21773899 >seq75 Length=6520592 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | || || ||||| ||| ||||| || |||||||||||||| Sbjct 967700 ACCACCACGAAGCCTCAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGC 967641 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || |||| |||| ||||| || || | || | | ||||||||| || Sbjct 967640 CAACGTGCGACCGTCTTCCAATTGCTTTCCCGCGAAGATAAGCCTTTGCTGATCCGGGGG 967581 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCG 48677 | | |||||||||| || || |||| | | | | || || |||| ||| Sbjct 967580 AATTCCTTCCTTGTCCTGGATCTT-GGCTTTAACGTTGTCGATCGTGTCGGAGCTTTCCA 967522 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || ||||| || |||||||||||||| || ||||| |||||| Sbjct 967521 CCTCGAGGGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAAATTTGCATC 967472 >seq47 Length=18124089 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCTC 48576 || ||||| || || ||||| || ||||||||||| | | | |||| | | ||||| Sbjct 4075183 ACCAAATGGAGCGTCGATTCCTTCTGGATGTTGTAATC-GGCGAGTGTCCTTCCATCCTC 4075241 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || ||||| ||| || |||| | |||||| |||||| || | | |||||| ||| Sbjct 4075242 CAATTGCTTCCCGGCGAAAATCAGACGCTGTTGATCCGGTGGGATTCCTTCCTTATCCTG 4075301 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || ||| ||| | | | || ||||||| || || ||| | ||||| || || Sbjct 4075302 GATCTTCGCCTTCACATTGTCGATTGTATCGGAGGATTCGACCTCTAGGGTTATTGTCTT 4075361 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || |||||||| || |||||||| Sbjct 4075362 TCCGGTTAGGGTTTTCACGAATATCTGCAT 4075391 >seq72 Length=2807273 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| || ||||| || |||||| |||||||| || |||||||| || | ||| Sbjct 226601 AACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGCCAAGGTGCGACCATCC 226660 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || || ||||| || | | || | ||||||||||||| || | || |||||| ||| Sbjct 226661 TCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGGATACCTTCCTTATCC 226720 Query 48635 ATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692 ||| || ||| | | | || || || || | |||| ||| | || |||| Sbjct 226721 TGAATCTTGGCCTTCACGTTGTCG--ATTGTGTCTGAGCTCTCCACCTCCAGAGTAATGG 226778 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || ||||| || || || || ||||||||||| Sbjct 226779 TCTTGCCGGTAAGTGTCTTGACGAAAATCTGCAT 226812 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||||| || | |||||| || |||||| || ||||||||||| || Sbjct 227269 ACCACCACGGAGCCTTAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAATCCGC 227328 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || |||| |||| |||||| ||| || | || | | |||||||||| || Sbjct 227329 CAAGGTACGACCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGG 227388 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||| |||||| || || |||| | | || || || | |||| Sbjct 227389 AATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTATCGATTGTGTCAGAGCTCTCCAC 227448 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || |||||||| || || || || |||||||| Sbjct 227449 CTCTAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 227496 >seq139 Length=20634497 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || ||| || |||||||||||||| ||||| || | ||||| ||||| Sbjct 14477825 ATGAAGAGTTGACTCTTTCTGAATGTTGTAATCCGCCAAAGCGCGACCATCCTCGAGCTG 14477884 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 || ||| | | |||| | ||| || ||| || | | ||| |||||| ||| || Sbjct 14477885 TTTTCCGGCAAAGATTAGTCTCTGTTGGTCCGGAGGGATCCCTTCTTTGTCCTGAATCTT 14477944 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | || ||||| | |||| ||| | ||||||||| ||||| || Sbjct 14477945 CGCCTTTACATTGTCAATCGTATCCGAGCTCTCCACCTCAAGTGTTATGGTCTTACCCGT 14478004 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 | || || ||||| ||||||||| Sbjct 14478005 CAACGTCTTGACAAATATCTGCATC 14478029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250378560160