Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq126 118 6e-22 seq77 113 2e-20 seq47 113 2e-20 seq110 111 8e-20 seq80 111 8e-20 seq139 109 3e-19 seq92 109 3e-19 seq64 109 3e-19 seq101 105 3e-18 seq66 104 1e-17 seq115 102 4e-17 >seq126 Length=8766530 Score = 118 bits (130), Expect = 6e-22 Identities = 84/96 (88%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 11435 AGAATTAATAAAA-AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 |||| ||| ||| || ||||||||||||| | | |||||||| |||||||||||||| Sbjct 5621905 AGAACTAAAAAACTAAGTAAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTA 5621846 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||||||||||||||||||| Sbjct 5621845 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 5621810 >seq77 Length=18658056 Score = 113 bits (124), Expect = 2e-20 Identities = 82/95 (86%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 || ||| | ||||| || | ||||||||| | | |||||||| ||||||||||||||| Sbjct 17581400 AAGTAAAAGAAAATGAATAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTAT 17581459 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||||||||||||||||||| Sbjct 17581460 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 17581494 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 17581277 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 17581336 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 17581337 CAACTGAGCTAATGGGCC 17581354 >seq47 Length=18124089 Score = 113 bits (124), Expect = 2e-20 Identities = 81/94 (86%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||| ||||| || | ||||||||||| |||||||||||||||||||||||| Sbjct 16753796 AAAAATTAAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACG 16753737 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCGACGAT 11538 |||| ||||||||||||||| |||| | || ||| Sbjct 16753736 CTCTAACCAACTGAGCTAATAGGCCATTGATGAT 16753703 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 14782948 AAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 14783007 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 14783008 AACTGAGCTAATGGGCC 14783024 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 14794956 AAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 14795015 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 14795016 AACTGAGCTAATGGGCC 14795032 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||||| | | |||||||| |||||||||||||||||||||||||||| || Sbjct 6400970 AAAATGGCCCATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 6401029 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 6401030 CAACTGAGCTAATGGGCC 6401047 >seq110 Length=4329799 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 4317774 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 4317715 Query 11516 TGAGCTAATGGGCCGTCG 11533 |||||||||||||| ||| Sbjct 4317714 TGAGCTAATGGGCCATCG 4317697 >seq80 Length=21647715 Score = 111 bits (122), Expect = 8e-20 Identities = 78/89 (88%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 17013022 AAAAAAAAAGTAA--TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 17012965 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 17012964 GACGCTCTAACCAACTGAGCTAATGGGCC 17012936 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 8388349 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 8388290 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 8388289 CAACTGAGCTAATAGGCC 8388272 >seq139 Length=20634497 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 19924287 AAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 19924346 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 19924347 AACTGAGCTAATGGGCC 19924363 Score = 95.1 bits (104), Expect = 6e-15 Identities = 86/107 (80%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 11425 AGGGAAATATAGAATTAATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGA 11482 ||||| || |||||||| |||| | | | ||||| || | | |||||||| || Sbjct 19924137 AGGGACGTA-AGAATTAAATAAAATTTTATTAATGGCCTATACAGGTTTCGAACCTGTGA 19924195 Query 11483 CCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 19924196 CCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 19924242 >seq92 Length=17487894 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 7312210 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 7312151 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 7312150 TGAGCTAATGGGCC 7312137 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 13773664 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 13773723 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 13773724 CAACTGAGCTAATAGGCC 13773741 Score = 96.9 bits (106), Expect = 2e-15 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| | ||| ||||| || | | |||||||| ||||||||||||||||||||||| Sbjct 15571268 AAAAGTTAAAAATGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGAC 15571209 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTCGACGATT-GTGATTTTTCATCTAAC 11556 ||||| ||||||||||||||| |||| | || | || || | | ||||| |||| Sbjct 15571208 GCTCTAACCAACTGAGCTAATAGGCCATTGATGTTTAGTTA-TGTTCATATAAC 15571156 >seq64 Length=9524166 Score = 109 bits (120), Expect = 3e-19 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||| ||||| || | ||||||||||| ||||||||||||||||||||||||| Sbjct 1538662 AAAATAAAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 1538721 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 1538722 TCTAACCAACTGAGCTAATAGGCC 1538745 >seq101 Length=14560423 Score = 105 bits (116), Expect = 3e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||| || | ||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 5645765 AATTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACC 5645824 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 5645825 AACTGAGCTAATAGGCC 5645841 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 5645921 AAGTTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 5645980 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 5645981 CAACTGAGCTAATAGGCC 5645998 Score = 91.5 bits (100), Expect = 8e-14 Identities = 71/84 (85%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 11447 AAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||| ||| | ||||| || | | |||||||| ||||||||||||||||||||||||| Sbjct 2300666 AAAACAAGTGTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 2300607 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 2300606 TCTAACCAACTGAGCTAATAGGCC 2300583 >seq66 Length=12628956 Score = 104 bits (114), Expect = 1e-17 Identities = 79/93 (85%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| || || |||| |||| || | ||||||||||| |||||||||||||||| Sbjct 6910853 AATTAAGAATTAAAAAAAT-GGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTA 6910911 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 6910912 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 6910944 Score = 89.7 bits (98), Expect = 3e-13 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 11477 CTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 11298208 CTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 11298260 >seq115 Length=22393718 Score = 102 bits (112), Expect = 4e-17 Identities = 73/84 (87%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || ||||| || | ||||||||||| ||||||||||||||||||||||||| Sbjct 19037263 AAAAT--AAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 19037320 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 19037321 TCTAACCAACTGAGCTAATAGGCC 19037344 Score = 98.7 bits (108), Expect = 5e-16 Identities = 74/87 (85%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || ||||| || | | |||||||| |||||||||||||||||||||||| Sbjct 18568132 AAAAAT--AAGTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 18568075 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGT 11531 |||| ||||||||||||||| |||||| Sbjct 18568074 CTCTAACCAACTGAGCTAATAGGCCGT 18568048 Lambda K H 0.637 0.409 0.918 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261490690092160