Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq115 152 8e-33 seq92 149 1e-31 seq47 149 1e-31 seq66 141 1e-29 seq139 129 9e-26 seq101 125 1e-24 seq98 118 2e-22 >seq115 Length=22393718 Score = 152 bits (168), Expect = 8e-33 Identities = 181/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || || | | ||| |||| |||||||||||||| || ||||| || ||| Sbjct 16598976 GCCAAGCGGCACCGGAAAGTTCTCAGAGACAACATCCAAGGAATTACGAAGCCTGCGATC 16599035 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| | | || || || |||||| || ||| ||| |||| ||||||| | Sbjct 16599036 CGTCGTCTGGCGAGAAGAGGAGGCGTGAAGCGTATCAGTGGTTTGATCTACGAAGAGACT 16599095 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG-CTTTCCACTATACCGA 16611 || | ||| | |||||||| | ||| ||| |||| ||| | | || || |||||||| Sbjct 16599096 CGCGGTGTCCTCAAGATCTTTTTGGAGAACGTGATCCGTGACGCCGTTACA-TATACCGA 16599154 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| ||||| |||||||| ||||||| || | || | || || Sbjct 16599155 GCACGCTCGCCGGAAGACGGTCACGGCCATGGATGTCGTCTACGCTCTCAAGAGACAGGG 16599214 Query 16672 CCG 16674 ||| Sbjct 16599215 CCG 16599217 Score = 134 bits (148), Expect = 2e-27 Identities = 177/243 (73%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || || | | ||| |||| ||||||||||| || || || || || ||| Sbjct 16593267 GCCAAGCGGCACCGGAAAGTTCTCAGAGACAACATCCAAGGGATTACGAAACCTGCGATC 16593326 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| | | || || ||||||||| || ||| ||| |||| ||||||| | Sbjct 16593327 CGTCGTCTGGCGAGAAGAGGAGGCGTCAAGCGTATCAGTGGTTTGATCTACGAAGAGACT 16593386 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG-CTTTCCACTATACCGA 16611 || | |||| | |||||||| | ||| ||| || | ||| | | || || || ||||| Sbjct 16593387 CGCGGTGTTCTCAAGATCTTTTTGGAGAACGTGATTCGTGACGCCGTTACA-TACACCGA 16593445 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| ||||| ||||||| | ||||| || | || | || || Sbjct 16593446 GCACGCTCGCCGGAAGACGGTCACAGCCATGGACGTTGTCTACGCTCTCAAGAGACAGGG 16593505 Query 16672 CCG 16674 ||| Sbjct 16593506 CCG 16593508 >seq92 Length=17487894 Score = 149 bits (164), Expect = 1e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| |||||||||||||| || || || | |||||||| | ||||||| Sbjct 9837290 GAGACAACATCCAGGGAATCACCAAGCCGGCGATTCGGAGGTTGGCTCGTAGAGGTGGAG 9837231 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| ||||||| ||| | ||| | |||||||| | Sbjct 9837230 TCAAGCGTATCAGTGGTCTGATCTACGAAGAGACTCGCGGTGTCCTCAAGATCTTTTTGG 9837171 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| || || || ||| ||||||||||| | | ||||| || ||| Sbjct 9837170 AGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCAGGAGGAAGACAGTGACCG 9837111 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 ||||||| ||||||| ||| |||| | ||||| | | | ||||| || || ||| Sbjct 9837110 CCATGGACGTCGTCTACGCACTGAAGAGGCAAGGAAGGACCCTCTATGGATTCGGCGGTT 9837051 Query 16698 AA 16699 || Sbjct 9837050 AA 9837049 Score = 138 bits (152), Expect = 2e-28 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | ||| |||| |||||||| |||||||||||||| || ||| Sbjct 9672847 GCCAAGCGTCACAGGAAAGTTCTGAGAGACAACATCCAGGGAATCACCAAGCCGGCGATC 9672906 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | |||||||| | || ||||| |||||| || ||| || |||| || |||| Sbjct 9672907 CGGAGGTTGGCTCGTAGAGGAGGAGTAAAGCGTATCAGTGGTCTGATCTACGAGGAGACA 9672966 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | |||||||| | ||| ||| |||| ||||| || ||| |||||| Sbjct 9672967 CGTGGCGTCCTCAAGATCTTTTTGGAGAACGTCATCCGAGATGCCGTCACCTACACCGAG 9673026 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||| | | |||||||||||| ||||||| |||| || || Sbjct 9673027 CACGCCAGGAGGAAGACTGTCACCGCCATGGACGTCGTTTACGC 9673070 Score = 134 bits (148), Expect = 2e-27 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 ||||||||||||| |||||||||||||| || || || | |||||||| | ||||||| Sbjct 9676873 GAGATAACATCCAGGGAATCACCAAGCCGGCGATTCGGAGGTTGGCTCGTAGAGGTGGAG 9676932 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| ||||||| ||| | ||| | |||||||| | Sbjct 9676933 TCAAGCGTATCAGTGGTCTGATCTACGAAGAGACTCGCGGTGTCCTCAAGATCTTTTTGG 9676992 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| || || || ||| ||||||||||| | | ||||| || ||| Sbjct 9676993 AGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCAGGAGGAAGACAGTGACCG 9677052 Query 16638 CCATGGATATCGTCTATGC 16656 | ||||| |||| || || Sbjct 9677053 CTATGGACGTCGTTTACGC 9677071 Score = 129 bits (142), Expect = 9e-26 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| |||||||||||||| || || || | |||||||| | ||||||| Sbjct 9671163 GAGACAACATCCAGGGAATCACCAAGCCGGCGATTCGGAGGTTGGCTCGTAGAGGTGGAG 9671222 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| ||||||| ||| | ||| | |||||||| | Sbjct 9671223 TCAAGCGTATCAGTGGTCTGATCTACGAAGAGACTCGCGGTGTCCTCAAGATCTTTTTGG 9671282 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| || || || ||| ||||||||||| | | ||||| || ||| Sbjct 9671283 AGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCAGGAGGAAGACAGTGACCG 9671342 Query 16638 CCATGGATATCGTCTATGC 16656 | ||||| |||| || || Sbjct 9671343 CTATGGACGTCGTTTACGC 9671361 >seq47 Length=18124089 Score = 149 bits (164), Expect = 1e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||||||||| ||||||||||| || || |||||||| |||||| | || || | Sbjct 14129575 GAGATAACATCCAAGGTATCACCAAGCCTGCGATTCGTCGTCTTGCTCGTAGAGGAGGTG 14129516 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || || || |||| ||||||| | | || | |||||||||||| Sbjct 14129515 TGAAGCGTATCAGCGGTCTGATCTACGAAGAGACCAGAGGAGTCCTCAAGATCTTCCTCG 14129456 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || |||| ||| || || || || |||||||| | | ||||| || ||| Sbjct 14129455 AGAATGTCATCCGTGACGCCGTCACTTACACTGAGCACGCCAGGAGGAAGACGGTGACCG 14129396 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| ||||||| || ||||| | || || |||| | || ||||| || ||| Sbjct 14129395 CCATGGATGTCGTCTACGCTTTGAAGAGGCAGGGACGTACTCTCTACGGTTTCGGCGGTT 14129336 Query 16698 AA 16699 || Sbjct 14129335 AA 14129334 Score = 141 bits (156), Expect = 1e-29 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||||||||| ||||| || || |||||||| || ||| | || || || Sbjct 14039858 GATAACATCCAAGGAATCACTAAGCCTGCGATTCGTCGTCTTGCACGTAGAGGAGGTGTG 14039917 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | || || |||| ||||||| | | || | |||||||||||| || Sbjct 14039918 AAGCGTATTAGCGGTCTGATCTACGAAGAGACCAGAGGAGTCCTCAAGATCTTCCTCGAG 14039977 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| ||| || || ||| || |||||||| | | ||||| || ||| || Sbjct 14039978 AATGTCATCCGTGACGCCGTCACCTACACTGAGCACGCCAGGAGGAAGACGGTGACCGCC 14040037 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| |||| ||||||||||| | || || || | | || ||||| || ||||| Sbjct 14040038 ATGGATGTCGTTTATGCATTGAAGAGGCAGGGACGAACTCTATACGGTTTCGGCGGTTAA 14040097 Query 16700 T 16700 | Sbjct 14040098 T 14040098 >seq66 Length=12628956 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| |||||||| ||||| || || | ||||| |||||| | || || | Sbjct 3020344 GAGACAACATCCAGGGAATCACGAAGCCTGCGATTAGGCGTCTTGCTCGTAGAGGAGGCG 3020403 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || || || |||| ||||| | | | |||||||||||||| ||| Sbjct 3020404 TGAAGAGAATCAGCGGTCTGATCTACGAAGAAACCAGAGGAGTTTTGAAGATCTTTCTCG 3020463 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||| || || ||| ||||||||||| | | ||||| || ||| Sbjct 3020464 AGAATGTCATTCGTGACGCCGTCACCTACACCGAGCACGCCAGGAGGAAGACGGTGACCG 3020523 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| ||||||| |||||||| | ||||| |||| | |||||||| || ||| Sbjct 3020524 CCATGGATGTCGTCTACGCATTGAAGAGACAAGGACGTACTCTCTATGGTTTCGGCGGTT 3020583 Query 16698 AAT 16700 || Sbjct 3020584 GAT 3020586 Score = 129 bits (142), Expect = 9e-26 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| ||||| || || | ||||| |||||| | || |||| Sbjct 3018432 GAGACAACATCCAAGGAATCACGAAGCCTGCGATTAGGCGTCTTGCTCGTAGAGGAGGAG 3018491 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || || || |||| ||||| | | | |||||||||||||| ||| Sbjct 3018492 TGAAGAGAATCAGCGGTCTGATCTACGAAGAAACCAGAGGAGTTTTGAAGATCTTTCTCG 3018551 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || ||| || || | || || |||||||||| | ||||| || ||| Sbjct 3018552 AGAATGTCATCAGAGACGCCGTGACTTACACTGAGCACGCTAGGAGGAAGACGGTGACCG 3018611 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 |||||||| |||||||||| ||||| | ||||| |||| Sbjct 3018612 CCATGGATGTCGTCTATGCTTTGAAGAGACAAGGACGTA 3018650 >seq139 Length=20634497 Score = 129 bits (142), Expect = 9e-26 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| ||||| ||||||||||| || || |||||||| |||||| | || || || Sbjct 17029608 GATAACATTCAAGGTATCACCAAGCCTGCGATTCGTCGTCTTGCTCGTAGAGGAGGTGTG 17029667 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | || || | || ||||||| | | ||| | |||||||| ||| || Sbjct 17029668 AAGCGTATAAGCGGTTTAATATACGAAGAGACAAGAGGAGTTCTCAAGATCTTTCTCGAG 17029727 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| |||||| | ||| || ||||| |||| | ||||| || || || Sbjct 17029728 AATGTCATCCGCGATGCTGTTACCTACACAGAGCATGCTAGGAGGAAGACGGTGACAGCC 17029787 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || || || ||||| | ||||| |||| | || || ||||| ||||| Sbjct 17029788 ATGGATGTTGTTTACGCCTTGAAGAGGCAAGGACGTACTCTCTACGGGTTTGGTGGTTAA 17029847 Query 16700 T 16700 | Sbjct 17029848 T 17029848 >seq101 Length=14560423 Score = 125 bits (138), Expect = 1e-24 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||||||||| ||||| || || | ||||| |||||| | || || | Sbjct 12015525 GAGATAACATTCAAGGAATCACGAAGCCTGCGATTAGGCGTCTTGCTCGTAGAGGAGGTG 12015584 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | || || || || ||| |||| ||||| | | | |||||||||||||| ||| Sbjct 12015585 TGAAACGAATCAGCGGTTTGATCTACGAAGAAACCAGAGGAGTTTTGAAGATCTTTCTCG 12015644 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| ||| || || | || || |||||||||| | ||||| || ||| Sbjct 12015645 AGAACGTCATCAGAGACGCCGTGACGTACACAGAGCACGCTAGGAGGAAGACGGTTACCG 12015704 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| |||| || || ||||| | ||||| || | | || ||||| || ||| Sbjct 12015705 CCATGGATGTCGTTTACGCCTTGAAGAGACAAGGACGCACTCTCTACGGTTTCGGTGGTT 12015764 Query 16698 AA 16699 || Sbjct 12015765 AA 12015766 >seq98 Length=12372032 Score = 118 bits (130), Expect = 2e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || ||||| || || || || || ||||| || || |||||| | || | | || Sbjct 9097506 TCTCCGGGATAATATTCAGGGGATTACGAAGCCGGCGATTCGTCGTTTAGCGAGAAGAGG 9097447 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 |||||| |||||| | || ||| |||| || |||| ||| | |||| | |||||||| Sbjct 9097446 TGGAGTGAAGCGTATTAGCGGTTTGATCTACGAGGAGACTCGCGGTGTTCTTAAGATCTT 9097387 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 |||| ||| ||| || | ||| || || || || ||||||||| || || || || Sbjct 9097386 CCTCGAGAACGTGATTCGTGACGCCGTCACTTACACGGAGCACGCTCGCCGGAAAACGGT 9097327 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAA 16662 ||| | |||||| |||||||||| |||| Sbjct 9097326 CACGGCGATGGATGTCGTCTATGCGCTGAA 9097297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075053710880