Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq153 572 5e-159 seq80 464 2e-126 seq90 105 2e-18 >seq153 Length=83015 Score = 572 bits (634), Expect = 5e-159 Identities = 727/995 (73%), Gaps = 4/995 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||| ||||| | || |||||||| || | Sbjct 52472 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 52413 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| | ||||| |||| || || || || || Sbjct 52412 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 52353 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || | | |||||||||||| Sbjct 52352 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 52293 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 ||||||||||| || | |||| | || || || || |||||||||| |||||| Sbjct 52292 ATTATTTCTGGTGCCATTATTCCTACTTCTGCCGCTATTGGTTTGCACTTTTACCCGATC 52233 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | | | ||||| ||| |||||||||| ||||| ||| |||| |||| Sbjct 52232 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 52173 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | ||||| ||| | || ||||| || ||| | |||||||||| || | | Sbjct 52172 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 52113 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 | || ||| | || ||||| || |||||| |||| || | |||| ||| |||| Sbjct 52112 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 52053 Query 19710 GTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 || ||||| | | |||||| |||| ||||| |||||| ||||||||||||||| || || Sbjct 52052 GT-TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 51994 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 |||||||||||| ||||||||| | |||||||| || || ||||| || |||||||| || Sbjct 51993 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 51934 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 || |||||| | ||||| ||||| |||||||| || || || || ||||||||| || Sbjct 51933 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGG 51874 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948 ||||| ||||| | |||| |||||| || || ||| ||| || | || Sbjct 51873 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 51814 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 || | ||||| ||||| ||||| || || || ||||| ||||| ||||| || ||||| Sbjct 51813 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 51754 Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068 ||||||| || ||||||||| |||||| || || ||||||||||||||||| | || Sbjct 51753 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGC 51694 Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128 ||| || || || || || ||| |||| | | || || |||||||||||||||| Sbjct 51693 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 51634 Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAA 20187 ||| |||||||| || || ||||| |||||||||||| ||||| ||| | || | Sbjct 51633 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA-GGACGTGTTATTAATA 51575 Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247 | ||||||||| | | || | |||||||| || | ||||||||||| || || |||| Sbjct 51574 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 51515 Query 20248 CTCATAACTTCCCACTTGATTTAGCTTCGGCTGAG 20282 |||| |||||||| || || ||||| | | |||| Sbjct 51514 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 51480 >seq80 Length=21647715 Score = 464 bits (514), Expect = 2e-126 Identities = 683/958 (71%), Gaps = 8/958 (1%) Strand=Plus/Plus Query 19311 ACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCT 19370 || || ||||| ||||| | || |||||||| || | |||| ||| |||| | Sbjct 17113468 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTAGTGATCCCTACCTTATTGAAC 17113527 Query 19371 GCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATA 19430 || ||| | ||||| |||| || || | | || | |||||||| ||||| || Sbjct 17113528 GCAACTTCCGTTTTTATTATCGCATTCATTGTTGTTCCTCTAGTAGATATTGATGGTATT 17113587 Query 19431 CGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAG-CAGTAGT 19489 |||| || ||||| | || | | ||||||||||||||||||||||| | || || | Sbjct 17113588 TGTGAACCTGTTTCTAGATCTCTTCTTTACGGAAACAATATTATTTCTGGTGTCATTA-T 17113646 Query 19490 TCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGA 19549 ||| | | || || || |||||||||| ||||||| |||||| | | | || Sbjct 17113647 TCCTACTTATGTCGCTATTGGTTTGCACTTTTACCCGATCTAGGAAGCTGCATCCGTTGA 17113706 Query 19550 TGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGT 19609 ||| ||| |||||||||| ||| ||| |||| |||| | ||||| ||| | || || Sbjct 17113707 TGAATGGCTATACAACGGTTGTCTTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT 17113766 Query 19610 AGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGAT 19669 ||| || ||| | |||||||||| || | | | || || | || ||||| Sbjct 17113767 AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCTGTCTGGGTGTGCGTCCTTGGAT 17113826 Query 19670 ATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCAT 19728 || || |||||| |||| ||| | |||| ||| |||||| ||||| | |||||| Sbjct 17113827 TTTTGTTGCATATTCAGCTCCAGTTGCAGCTGCTACTGCTGT-TTTCTTGAACTACCCAA 17113885 Query 19729 TTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTA 19788 || | ||||| |||||| ||||||||||||||| | |||||||||||||| ||||||| Sbjct 17113886 TTTGTCAAGGAAGTTTTTATGATGGTATGCCTCTATGAATCTCTGGTACTTTCAACTTTA 17113945 Query 19789 TGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTG 19848 || | |||||| | || || ||||| || |||||||| || || |||||| | ||||| | Sbjct 17113946 TGATTGTATTCTAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAG 17114005 Query 19849 CTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGA 19908 |||| |||||||| || || || || ||||||||| || |||||| ||||| Sbjct 17114006 CTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTT 17114065 Query 19909 TCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATG 19968 | |||| |||||| || || ||| ||| || | || || | ||||| ||||| | Sbjct 17114066 TGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAG 17114125 Query 19969 AAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATG 20028 || | || || || ||||| | ||| |||| || ||||| ||||||| || ||||||| Sbjct 17114126 AAAAAACTTACAACATTGTAGTTGCTCACGACTATTTTGGCCGATTGATCTTCCAATATG 17114185 Query 20029 CTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCA 20088 || |||||| || || ||||||||||||||||| | || ||| || || || | | Sbjct 17114186 CTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGCAGCTTGGCCGGTAGTAGCTA 17114245 Query 20089 TATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTA 20148 | ||| |||| | | || || ||||||||||||||||||| |||||||| | || | Sbjct 17114246 TTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAGTTTCA 17114305 Query 20149 ACCAGTCAGTAGTTGAT-GTCAACGGAAAG-ATAATCCCAACATGGGCTGATGTATTAAA 20206 ||| ||| |||||||| ||||| ||| | | || || ||||||||| | | || Sbjct 17114306 ACCCATCAATAGTTGATAGTCAA--GAACGTGTTATTAATACTTGGGCTGATATTATTAA 17114363 Query 20207 TAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTT 20264 | ||||| || | | ||||||||||| || || |||||||| |||||||| ||| Sbjct 17114364 CCGTGCTAATCTTGTTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTT 17114421 >seq90 Length=4948294 Score = 105 bits (116), Expect = 2e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 20046 CGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATG 20105 |||| |||||||||||| | || ||| || || | || ||| |||| | | Sbjct 3476973 CGTTTTTTACATTTCTTCTTAGCGGCTTGGCCGGTAATACATATTTGGTTTACTGCTTTA 3477032 Query 20106 GGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT 20165 || || ||||| | |||||||| || ||||||||||| || ||||| |||||||||||| Sbjct 3477033 GGTATTAGCACTGTAGCTTTCAATCTAAATGGTTTTAATTTCAACCAATCAGTAGTTGAT 3477092 Query 20166 -GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATT 20224 ||||| || | || || |||| |||| | | ||| | |||||||| || | Sbjct 3477093 AGTCAA-TGACGTGTTATTAATACTTGGGTTGATATTATTAATCGTGCTAACCTTGGTAT 3477151 Query 20225 TGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGA 20266 ||||||||||| | | |||||||| |||||||| || || Sbjct 3477152 GGAAGTTATGCATTAAGGTAATGCTCAAAACTTCCCTCTAGA 3477193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144441325560960