Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq153 531 8e-146 seq80 412 6e-110 seq90 136 6e-27 >seq153 Length=83015 Score = 531 bits (588), Expect = 8e-146 Identities = 688/945 (73%), Gaps = 4/945 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||||| | ||| | | | ||||| | ||||| Sbjct 52432 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATT 52374 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | |||||||| || || ||||| || ||||| || || || |||||||| || |||| Sbjct 52373 ATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 52314 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | || || ||||| || || |||||||| || |||| |||| ||| || Sbjct 52313 TCTCTTCTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCCGCTATT 52254 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 ||||| ||||| || || ||||||||||| ||| | ||||||| ||||| ||||| ||| Sbjct 52253 GGTTTGCACTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGT 52194 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 |||||||| | | | | | ||||| | | || | | || ||||| | Sbjct 52193 GGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 52134 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||||||| | |||| | ||||||||||||||||| |||||| |||||||| Sbjct 52133 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 52074 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 ||||| |||| ||| ||||| ||| | | |||||| | ||||| || || || Sbjct 52073 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCT 52014 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 || ||||||||| |||| || || || || |||||||| ||| | |||||||| || || Sbjct 52013 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 51954 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148 || ||||| |||||||||||||| || ||| |||||| || ||| | ||||| || | Sbjct 51953 CACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCC 51894 Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208 |||| ||||||||| ||||| | || || ||| | ||| | |||||||| | Sbjct 51893 CTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 51834 Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268 || || || | ||||||| ||||| ||||||||||| || || ||||| || Sbjct 51833 AATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTA 51774 Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGA 212328 ||||| || || || || || || | |||||||| ||||| ||||||||| | | Sbjct 51773 GCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCCCGT 51714 Query 212329 AGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGT 212388 |||||| |||||| | || | ||||| || | || | ||||| || || | ||| Sbjct 51713 TCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGT 51654 Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA 212448 || |||| ||||| |||||||||||||| ||||| |||||||||||||| |||||| Sbjct 51653 ATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAG- 51595 Query 212449 TCAGGTAAG-GTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGA 212507 ||| | | | ||| || |||||||| |||| || ||||| | || |||||||||||||| Sbjct 51594 TCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 51535 Query 212508 AGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||||||| ||| | ||||| ||||||||||| || ||| |||| Sbjct 51534 AGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 51490 >seq80 Length=21647715 Score = 412 bits (456), Expect = 6e-110 Identities = 659/941 (70%), Gaps = 4/941 (0%) Strand=Plus/Plus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCT-GCAACAACATGCTTTATC 211668 |||| |||||||||||| | ||||||| | ||| | | ||||| | ||||| Sbjct 17113487 TTGGATGGTTTGGTGTTTTAGTGATCCC-TACCTTATTGAACGCAACTTCCGTTTTTATT 17113545 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | |||||||| | | |||| || ||||| || || || ||||||| || || | Sbjct 17113546 ATCGCATTCATTGTTGTTCCTCTAGTAGATATTGATGGTATTTGTGAACCTGTTTCTAGA 17113605 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | || || ||||| || || ||||||| || |||| ||| ||| || Sbjct 17113606 TCTCTTCTTTACGGAAACAATATTATTTCTGGTGTCATTATTCCTACTTATGTCGCTATT 17113665 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 ||||| ||||| || || |||| |||||| ||| | ||||||| ||||| ||||| ||| Sbjct 17113666 GGTTTGCACTTTTACCCGATCTAGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGT 17113725 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 ||| ||| | | | | | ||||| | | || | | || ||||| | Sbjct 17113726 TGTCTTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 17113785 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||||||| | | || | ||| ||||||||||||| | |||||| |||||||| Sbjct 17113786 GAGTGGGAACTTAGTTTCTGTCTGGGTGTGCGTCCTTGGATTTTTGTTGCATATTCAGCT 17113845 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 || || |||| ||| ||||| ||| | |||||| | |||| || || | Sbjct 17113846 CCAGTTGCAGCTGCTACTGCTGTTTTCTTGAACTACCCAATTTGTCAAGGAAGTTTTTAT 17113905 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 || ||||||||| || | || || || || |||||||| ||| | |||||| | || || Sbjct 17113906 GATGGTATGCCTCTATGAATCTCTGGTACTTTCAACTTTATGATTGTATTCTAGGCTGAG 17113965 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148 || ||||| |||||||||||||| || ||| |||||| || ||| | ||||| || | Sbjct 17113966 CACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCC 17114025 Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208 |||| ||||||||| |||||| | || || ||| | ||| | |||||||| | Sbjct 17114026 CTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 17114085 Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268 || || || | ||||||| ||||| ||||||||| | || || ||||| || Sbjct 17114086 AATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAAAAACTTACAACATTGTA 17114145 Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGA 212328 | ||| || | || || || || | |||||||| ||||| ||||||||| | | Sbjct 17114146 GTTGCTCACGACTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCCCGT 17114205 Query 212329 AGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGT 212388 |||||| |||||| | ||| | ||||| || | | | ||||| || || | ||| Sbjct 17114206 TCTTTACATTTCTTCTTAGCAGCTTGGCCGGTAGTAGCTATTTGGTTTACTGCTTTAGGT 17114265 Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA 212448 || |||| ||||| |||||||||||||| |||| ||||||| |||| | |||||| Sbjct 17114266 ATTAGCACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAACCCATCAATAGTTGAT-AG 17114324 Query 212449 TCAGGTAAG-GTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGA 212507 ||| | | | ||| || |||||||| |||| || ||||| | || || |||| |||||| Sbjct 17114325 TCAAGAACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAATCTTGTTATGGA 17114384 Query 212508 AGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACT 212548 ||||||||| ||| | ||||| ||||||||||| ||| ||| Sbjct 17114385 AGTTATGCATGAACGTAATGCTCACAACTTCCCTCTTTACT 17114425 >seq90 Length=4948294 Score = 136 bits (150), Expect = 6e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 212331 TTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTAT 212390 |||||| |||||| | || | ||||| || || | | ||||| || || | ||||| Sbjct 3476978 TTTACATTTCTTCTTAGCGGCTTGGCCGGTAATACATATTTGGTTTACTGCTTTAGGTAT 3477037 Query 212391 CTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATC 212450 |||| | || ||||| |||||||| || || |||||||||||||| |||||| || Sbjct 3477038 TAGCACTGTAGCTTTCAATCTAAATGGTTTTAATTTCAACCAATCAGTAGTTGATAG-TC 3477096 Query 212451 AGGTAAG-GTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAG 212509 | | | ||| || |||||||| |||| || |||| | || |||||||||||||||| Sbjct 3477097 AATGACGTGTTATTAATACTTGGGTTGATATTATTAATCGTGCTAACCTTGGTATGGAAG 3477156 Query 212510 TTATGCACGAAAGAAATGCACACAACTTCCCACTTGA 212546 ||||||| || | ||||| || |||||||| || || Sbjct 3477157 TTATGCATTAAGGTAATGCTCAAAACTTCCCTCTAGA 3477193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807553584889600