Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq115 109 5e-19 seq101 105 6e-18 seq139 102 8e-17 seq92 93.3 4e-14 seq80 82.4 7e-11 seq75 82.4 7e-11 >seq115 Length=22393718 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | ||||| |||| | |||||| Sbjct 21773897 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACACTCGAGGTCGAATCA 21773956 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | |||||| ||||| ||||| ||||| || || || ||| Sbjct 21773957 TCTGACACCATCGACAATGTCAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGAT 21774016 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || | |||| || ||| ||||| |||||||| | ||| | || ||||| Sbjct 21774017 CAGCAGCGATTGATTTTCGCCGGAAAACAGCTCGAAGACGGCCGAACCCTCGCTGACTAC 21774076 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| ||| | |||||||| || Sbjct 21774077 AACATCCAGAAGGAATCAACTCTTCATCTGGTTCT 21774111 >seq101 Length=14560423 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || || || | || ||||| | ||||| | ||| | ||| Sbjct 13329205 AATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACCATCACTCTTGAAGTTGAAAGCTC 13329264 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| || | || ||| |||||| ||||||||||| || ||||| ||||| Sbjct 13329265 TGACACCATTGACAACGTTAAAGCTAAGATTCAAGACAAAGAAGGTATTCCTCCGGATCA 13329324 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||||||| || | || || || ||||| ||||||| |||| || ||||| || Sbjct 13329325 GCAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGAAGAACTCTCGCTGACTACAA 13329384 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| ||||| || || ||| ||||| |||| || Sbjct 13329385 CATCCAAAAGGAGTCCACTCTCCATTTGGTGCT 13329417 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | ||||| || | ||||| |||| | || Sbjct 13328978 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGAGCTCT 13329037 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || |||||| ||||| ||||| || ||||| ||||| Sbjct 13329038 GACACCATCGACAACGTTAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCGGATCAG 13329097 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAG-CGACTATAA 26947 |||||| | || | || ||| ||||| | ||||||| | || | || ||| || || Sbjct 13329098 CAAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGCCG-TACTTTAGCCGATTACAA 13329156 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||| || || |||||||| | ||| ||||||| | || |||||||||| Sbjct 13329157 CATCCAGAAGGAATCTACCCTTCATTTGGTCCTCCGTCTAAGAGGAGGAA 13329206 >seq139 Length=20634497 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || |||||| | |||||||| | ||||| |||| | || Sbjct 11242238 ATGCAAATATTCGTGAAAACACTGACTGGAAAGACCATCACTCTCGAGGTTGAGAGCTCT 11242297 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || |||||| ||||| |||||||| ||||| ||||| Sbjct 11242298 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGGATTCCTCCGGATCAG 11242357 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 |||||| | || | | ||| |||||||| ||||||| | || | ||| || || || Sbjct 11242358 CAAAGATTGATCTTTGCCGGAAAACAACTAGAAGATGGCCG-GACCTTAGCTGATTACAA 11242416 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| ||||| || ||||| | ||||| ||||| Sbjct 11242417 CATCCAAAAGGAGTCTACGCTTCATCTTGTCCT 11242449 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827 |||||| | ||||| || || | ||||| ||| | |||||| | || | || | | | Sbjct 11242466 ATGCAAATCTTTGTGAAGACTCTGACTGGTAAAACTATCACCTTGGAGGTTGAGAGCTCA 11242525 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||| | || ||| ||||| |||||||| || || ||||| || || Sbjct 11242526 -GACACCATCGATAATGTGAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCA 11242584 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||||||| || | || || || || || ||||||| | | | | ||| || || Sbjct 11242585 GCAAAGACTTATATTCGCTGGTAAGCAGCTTGAAGATGGTCGCACGCTTGCCGATTACAA 11242644 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 || || ||||| || ||| ||||| |||| || | ||| | || ||| Sbjct 11242645 TATCCAGAAAGAGTCCACTCTCCATTTGGTGTTGCGTCTTCGTGGTGGA 11242693 >seq92 Length=17487894 Score = 93.3 bits (102), Expect = 4e-14 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || ||| |||||| ||||| |||||||| ||||| |||||| Sbjct 10601198 GACACTATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCCTCCGGATCAA 10601139 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||||||||||| | | ||| |||||||| || |||| | | || | || || || || Sbjct 10601138 CAAAGACTCATCTTTGCCGGTAAACAACTTGAGGATGGTCG-TACATTGGCAGATTACAA 10601080 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| || || ||| |||| |||| || || | ||||| || Sbjct 10601079 TATTCAAAAGGAGTCGACTCTCCACTTGGTTCTTAGGTTGAGAGGTGG 10601032 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 |||||| | ||||| || || | || || || | || ||| | ||| | ||| ||| Sbjct 10601486 ATGCAAATCTTTGTTAAGACTCTTACCGGGAAGACCATAACCCTAGAAGTTGAAAGCTCA 10601427 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||| || | ||||| |||||| || |||||||| || ||||| || Sbjct 10601426 ---GACACCATAGACAACGTCAAGGCTAAGATTCAAGATAAAGAAGGAATCCCTCCAGAC 10601370 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 ||||||||||| || | | || ||||||||||| |||| | | | | || || Sbjct 10601369 CAACAAAGACTTATCTTTGCTGGTAAACAACTCGAGGATGGTCGTACATTGTCGGATTAC 10601310 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| |||||||| || || |||| |||| || || | ||||| || Sbjct 10601309 AACATCCAAAAAGAGTCAACGCTCCACTTGGTTCTTAGGTTGAGAGGTGG 10601260 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||| || ||| | ||||| |||||| ||||| ||||| || ||| | || || Sbjct 12099416 CGACACAATTGAGAACGTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTTCAGACCA 12099475 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||||||| || | | |||||||||| | ||||||| | | | | || || || Sbjct 12099476 ACAAAGACTTATCTTTGTCGGCAAACAATTAGAAGATGGACGTACTTTGAATGAATACAA 12099535 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| ||||| ||| |||| |||||||| | | ||||| || Sbjct 12099536 TATCCAAAAGGAATCAACTCTCCACTTGGTCCTGCGTTTGAGAGGTGG 12099583 >seq80 Length=21647715 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| || || ||||||| ||| | ||||| | ||| | ||| Sbjct 2366333 AATGCAAATCTTTGTCAAGACTCTAACTGGCAAAACCATCACACTAGAAGTTGAAAGTTC 2366392 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || ||||| || | |||||| |||||| ||||||||||| || ||||| ||||| Sbjct 2366393 TGATACCATTGACAATGTCAAAGCTAAGATTCAGGACAAAGAAGGAATCCCTCCGGATCA 2366452 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || ||||| || | | || || ||| || |||| | | | || || || || Sbjct 2366453 GCAGAGACTTATCTTTGCTGGAAAGCAATGAGAGGATGGTCGCACACTCGCTGATTACAA 2366512 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| || ||||| | || || ||||| Sbjct 2366513 TATTCAAAAGGAGTCTACACTTCACCTTGTCCT 2366545 >seq75 Length=6520592 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 ||||| | ||||| || || || || || || | |||||| | || | ||| ||| Sbjct 967929 ATGCAGATCTTTGTCAAGACGTTGACCGGCAAGACAATCACCCTGGAGGTTGAAAGCTCA 967988 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | || ||| |||||| ||||| ||||| || ||||| || Sbjct 967989 ---GACACCATCGATAACGTAAAAGCCAAGATTCAAGACAAGGAAGGTATCCCTCCGGAC 968045 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTA 26944 || || ||| | || | || || || || |||||||||| | ||| | ||| ||||| Sbjct 968046 CAGCAGAGATTGATCTTCGCAGGAAAGCAGCTCGAAGATGGCCG-AACTTTAGCTGACTA 968104 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || || || | || ||||||| | || ||||| || Sbjct 968105 CAACATCCAGAAGGAGTCGACCCTTCACTTGGTCCTCCGTCTAAGAGGTGG 968155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478661442675200