Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq126 131 4e-25 seq77 107 5e-18 seq64 84.2 6e-11 >seq126 Length=8766530 Score = 131 bits (144), Expect = 4e-25 Identities = 219/312 (70%), Gaps = 6/312 (2%) Strand=Plus/Minus Query 111578 TGATCAATTACAGAATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCAT--T 111635 ||||||| | | |||| || || | || |||||||| || | ||| ||||| | Sbjct 4332470 TGATCAACTCGTGGATGTAATCGACAAGATCAAGAACAATCCTGATGATCGACGCATCAT 4332411 Query 111636 ATTATGAGTGCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTT 111695 ||||| || | ||||| || || | || ||||| ||||| |||||||| | | Sbjct 4332410 ATTATCAG--CTTGGAATCCTTCTGATCTCAAATTGATGGCGCTTCCTCCATGTCA-CAT 4332354 Query 111696 ATGTGC-CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGC 111754 | ||| ||||| |||||| || || ||| ||||| |||||||||||||| || || Sbjct 4332353 GTTTGCACAGTTCTATGTAGCAGAAGGAGAGCTCTCATGTCAAATGTATCAGCGTTCAGC 4332294 Query 111755 TGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAAT 111814 || || || |||||||| |||||||| ||||| ||| | || ||||||||| | | Sbjct 4332293 GGACATGGGCCTTGGTGTACCGTTTAACATTGCTTCCTACTCTCTTCTTACTTGCATCCT 4332234 Query 111815 CGCTCATTTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGT 111874 ||||||| | |||| || ||||| || | ||| ||||| || ||||| ||||| Sbjct 4332233 CGCTCATGTCTGTGATCTTGTTCCTGGTGACTTTACTCATGTTATTGGGGATGCTCATGT 4332174 Query 111875 TTACACAAACCA 111886 ||| ||| || Sbjct 4332173 GTACCGAAATCA 4332162 >seq77 Length=18658056 Score = 107 bits (118), Expect = 5e-18 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 111592 ATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGA 111651 |||| ||| | | || |||||||| || | ||| || ||||| || || |||| Sbjct 13060507 ATGTAATTAACAAGATCAAGAACAATCCTGATGATCGACGGATTATAATCTCAGCTTGGA 13060566 Query 111652 ACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTAT 111710 | ||| || | || ||||| ||||| ||||| || | | | ||| |||||||| Sbjct 13060567 ATCCATCTGATCTTAAACTGATGGCGCTTCCTCCATGCCA-CATGTTTGCACAGTTTTAC 13060625 Query 111711 GTACACGACGGGATG-CTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGG 111769 ||| ||| ||| |||||||| ||||||||||| || || |||||||| ||||| || Sbjct 13060626 GTAG-CGAATGGAGAACTTTCATGTCAAATGTATCAACGTTCAGCTGATATGGGTCTCGG 13060684 Query 111770 TGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||| |||||||| ||||| ||| | ||||||| ||| | |||||||| Sbjct 13060685 TGTACCGTTTAACATTGCTTCGTACTCTTTACTTACATGCATTCTCGCTCAT 13060736 >seq64 Length=9524166 Score = 84.2 bits (92), Expect = 6e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 22857 TAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAA 22916 |||||| ||||| |||||||||||||| || ||| | || || || || |||||||| || Sbjct 404453 TAATCCGTTTGATTGGATGGAACTTATCTCGCTTCAGGGGAAAACAAACTTCTTCGAGAA 404512 Query 22917 AAGAGTTGGTGAATACCAAAAAGC 22940 |||||||| || ||||| ||||| Sbjct 404513 GAGAGTTGGCGATTACCAGAAAGC 404536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303350928125120