Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31]
160 sequences; 229,211,023 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq101 96.9 3e-15
seq92 93.3 4e-14
seq139 87.8 2e-12
seq75 86.0 5e-12
>seq101
Length=14560423
Score = 96.9 bits (106), Expect = 3e-15
Identities = 150/212 (71%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344
||||||||| || ||||| || ||||| ||||| ||||| || | ||| || |
Sbjct 13329205 AATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACCATCACTCTTGAAGTTGAAAGCTC 13329264
Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403
||||| ||| |||| || ||| || ||| || |||||||| | || ||||
Sbjct 13329265 TGACACCATTG-ACAACGTTAAAGCTAAGATTCAAGACAAAGAAGGTATTCCTCCGGATC 13329323
Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463
||||||||||||| | || || || ||| | ||||||| | ||| | || || || |
Sbjct 13329324 AGCAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGAAGAACTCTCGCTGACTACA 13329383
Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTG 115495
|||| ||||| ||||| ||| | ||| |||||
Sbjct 13329384 ACATCCAAAAGGAGTCCACTCTCCATTTGGTG 13329415
>seq92
Length=17487894
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
|||||||| || || || || || || || || ||||||||| | ||| || |
Sbjct 12099585 ATGCAAATCTTCGTTAAGACTCTTACAGGGAAGACCATTACCTTAGAAGTTGAAAGCTCA 12099644
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| | | |||| ||||| || ||| ||||||||||| |||| |||||
Sbjct 12099645 GACACAATAG-ACAACGTAAAGGCTAAGATTCAAGATAAAGAAGGAATCCCTCCAGATCA 12099703
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||||||||||| | ||| || |||||| | || |||| || |||| ||||| ||
Sbjct 12099704 ACAAAGACTTATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACATTGGCTGATTACAA 12099763
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
||| |||||||||| ||| | || |||| | || ||| |||| ||
Sbjct 12099764 CATCAAAAAAGAGTCAACTCTTCACTTGGTTCTTAGGTTGAGAGGTGG 12099811
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| || ||||| ||||| ||||| || |||||||||||| | ||| |||| |
Sbjct 10601030 ATGCAGATATTTGTGAAAACCCTCACCGGTAAAACCATTACCCTAGAAGTGGAGAGCTCA 10600971
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
|||||| || ||||| || ||| || ||| || || ||||| |||| |||||
Sbjct 10600970 GACACTATT-GACAACGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCCTCCGGATCA 10600912
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
|| ||||| || | || || |||||| | || |||| ||| | || ||||| ||
Sbjct 10600911 ACAGAGACTCATCTTCGCAGGTAAACAACTTGAGGATGGTCGAACGCTTGCAGATTACAA 10600852
Query 115465 CATTCAAAAAGAGTCTAC 115482
||| || || || || ||
Sbjct 10600851 CATCCAGAAGGAATCAAC 10600834
>seq139
Length=20634497
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/230 (69%), Gaps = 12/230 (5%)
Strand=Plus/Minus
Query 115289 CAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACC------GTCGAAACGGAGTCC 115342
||||| || || || || |||||||| || ||||| ||| ||||||| || |
Sbjct 14478708 CAAATCTTCGTAAAGACTCTCACGGGCAAGACCATAACCTTAGAGGTCGAAA----GTTC 14478653
Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402
|||||| || | | | || || ||| || || ||||||||| | | ||
Sbjct 14478652 --CGACACAGTGGAAAACGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTTCTTCAGAC 14478595
Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462
||||||||||| || | ||| ||||||||| | ||||||| || |||| |||||
Sbjct 14478594 CAGCAAAGACTGATCTTTGCCGGCAAACAACTTGAAGATGGTCGTACATTGGCAGATTAC 14478535
Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
||||||||||| |||| ||| | || |||| || | ||| |||| ||
Sbjct 14478534 AACATTCAAAAGAAGTCAACTCTCCACTTGGTTCTGCGTTTGAGAGGTGG 14478485
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
|||||||| || || ||||| || || ||||| ||||| || |||| ||| |
Sbjct 11242238 ATGCAAATATTCGTGAAAACACTGACTGGAAAGACCATCACTCTCGAGGTTGAGAGCTCT 11242297
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| | | |||| || || ||| || || || ||||| | || |||||
Sbjct 11242298 GACACCATCG-ACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGGATTCCTCCGGATCA 11242356
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||||||| | || | ||| || |||||| ||||||||| | ||| | || ||||| ||
Sbjct 11242357 GCAAAGATTGATCTTTGCCGGAAAACAACTAGAAGATGGCCGGACCTTAGCTGATTACAA 11242416
Query 115465 CATTCAAAAAGAGTCTAC 115482
||| ||||| ||||||||
Sbjct 11242417 CATCCAAAAGGAGTCTAC 11242434
>seq75
Length=6520592
Score = 86.0 bits (94), Expect = 5e-12
Identities = 150/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||||||||| || ||||| ||||| || || ||||| ||| |||| ||| | |
Sbjct 967473 ATGCAAATTTTCGTTAAAACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCC 967532
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| | | ||||| || ||| || || || || ||||| | ||| |||||
Sbjct 967533 GACAC-GATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCA 967591
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
|||||| ||||| | ||||| || ||||| ||||| | || |||| ||||| ||
Sbjct 967592 GCAAAGGCTTATCTTCGCGGGAAAGCAATTGGAAGACGGTCGCACGTTGGCTGATTACAA 967651
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500
||| || || || || || | || |||| ||||
Sbjct 967652 CATCCAGAAGGAATCCACCCTTCACTTGGTTCTGAG 967687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425343170579200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |