Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq101 96.9 3e-15 seq92 93.3 4e-14 seq139 87.8 2e-12 seq75 86.0 5e-12 >seq101 Length=14560423 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| || ||||| || ||||| ||||| ||||| || | ||| || | Sbjct 13329205 AATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACCATCACTCTTGAAGTTGAAAGCTC 13329264 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| ||| |||| || ||| || ||| || |||||||| | || |||| Sbjct 13329265 TGACACCATTG-ACAACGTTAAAGCTAAGATTCAAGACAAAGAAGGTATTCCTCCGGATC 13329323 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||||||||||| | || || || ||| | ||||||| | ||| | || || || | Sbjct 13329324 AGCAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGAAGAACTCTCGCTGACTACA 13329383 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTG 115495 |||| ||||| ||||| ||| | ||| ||||| Sbjct 13329384 ACATCCAAAAGGAGTCCACTCTCCATTTGGTG 13329415 >seq92 Length=17487894 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || || || || || || || || ||||||||| | ||| || | Sbjct 12099585 ATGCAAATCTTCGTTAAGACTCTTACAGGGAAGACCATTACCTTAGAAGTTGAAAGCTCA 12099644 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | |||| ||||| || ||| ||||||||||| |||| ||||| Sbjct 12099645 GACACAATAG-ACAACGTAAAGGCTAAGATTCAAGATAAAGAAGGAATCCCTCCAGATCA 12099703 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||||||| | ||| || |||||| | || |||| || |||| ||||| || Sbjct 12099704 ACAAAGACTTATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACATTGGCTGATTACAA 12099763 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| |||||||||| ||| | || |||| | || ||| |||| || Sbjct 12099764 CATCAAAAAAGAGTCAACTCTTCACTTGGTTCTTAGGTTGAGAGGTGG 12099811 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||| ||||| || |||||||||||| | ||| |||| | Sbjct 10601030 ATGCAGATATTTGTGAAAACCCTCACCGGTAAAACCATTACCCTAGAAGTGGAGAGCTCA 10600971 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| || ||||| || ||| || ||| || || ||||| |||| ||||| Sbjct 10600970 GACACTATT-GACAACGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCCTCCGGATCA 10600912 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || ||||| || | || || |||||| | || |||| ||| | || ||||| || Sbjct 10600911 ACAGAGACTCATCTTCGCAGGTAAACAACTTGAGGATGGTCGAACGCTTGCAGATTACAA 10600852 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||| || || || || || Sbjct 10600851 CATCCAGAAGGAATCAAC 10600834 >seq139 Length=20634497 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 12/230 (5%) Strand=Plus/Minus Query 115289 CAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACC------GTCGAAACGGAGTCC 115342 ||||| || || || || |||||||| || ||||| ||| ||||||| || | Sbjct 14478708 CAAATCTTCGTAAAGACTCTCACGGGCAAGACCATAACCTTAGAGGTCGAAA----GTTC 14478653 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 |||||| || | | | || || ||| || || ||||||||| | | || Sbjct 14478652 --CGACACAGTGGAAAACGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTTCTTCAGAC 14478595 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| ||||||||| | ||||||| || |||| ||||| Sbjct 14478594 CAGCAAAGACTGATCTTTGCCGGCAAACAACTTGAAGATGGTCGTACATTGGCAGATTAC 14478535 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| |||| ||| | || |||| || | ||| |||| || Sbjct 14478534 AACATTCAAAAGAAGTCAACTCTCCACTTGGTTCTGCGTTTGAGAGGTGG 14478485 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || || ||||| || || ||||| ||||| || |||| ||| | Sbjct 11242238 ATGCAAATATTCGTGAAAACACTGACTGGAAAGACCATCACTCTCGAGGTTGAGAGCTCT 11242297 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | |||| || || ||| || || || ||||| | || ||||| Sbjct 11242298 GACACCATCG-ACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGGATTCCTCCGGATCA 11242356 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||| | || | ||| || |||||| ||||||||| | ||| | || ||||| || Sbjct 11242357 GCAAAGATTGATCTTTGCCGGAAAACAACTAGAAGATGGCCGGACCTTAGCTGATTACAA 11242416 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||| ||||| |||||||| Sbjct 11242417 CATCCAAAAGGAGTCTAC 11242434 >seq75 Length=6520592 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || ||||| ||||| || || ||||| ||| |||| ||| | | Sbjct 967473 ATGCAAATTTTCGTTAAAACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCC 967532 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | ||||| || ||| || || || || ||||| | ||| ||||| Sbjct 967533 GACAC-GATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCA 967591 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| ||||| | ||||| || ||||| ||||| | || |||| ||||| || Sbjct 967592 GCAAAGGCTTATCTTCGCGGGAAAGCAATTGGAAGACGGTCGCACGTTGGCTGATTACAA 967651 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 ||| || || || || || | || |||| |||| Sbjct 967652 CATCCAGAAGGAATCCACCCTTCACTTGGTTCTGAG 967687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425343170579200