Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq101 96.9 3e-15 seq47 95.1 1e-14 seq80 93.3 3e-14 seq75 93.3 3e-14 seq72 93.3 3e-14 seq92 84.2 2e-11 >seq101 Length=14560423 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| ||||| || ||||| || ||||||||||| ||| Sbjct 1860799 CCACCACGGAGCCTGAGGACGAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCAGCC 1860740 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | | ||||| | ||| || || || | || | || ||| |||||| || Sbjct 1860739 AAGGTTCGGCCATCCTCGAGTTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 1860680 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || ||| ||||| | | | |||||| | |||| Sbjct 1860679 ATACCCTCCTTGTCTTGGATCTTAGCT--TTCACGTTATCGATGGTGTCGGAGCTCTCCA 1860622 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| || || |||||||| || || ||||| || |||||||| Sbjct 1860621 CCTCAAGGGTAATCGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 1860573 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||| ||||| |||||||| || |||| ||| | ||||| | ||| Sbjct 13329636 TGAAGTGTGGACTCTTTTTGGATGTTGTAATCCGCCAAGGTCCGACCATCCTCGAGCTGT 13329577 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || | || || | ||| |||||| ||| | || || ||||| ||| | | Sbjct 13329576 TTTCCGGCGAATATGAGTCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGAATCTTC 13329517 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||| | |||| |||| ||| || ||||||||||| Sbjct 13329516 GCCTTCACATTATCAATGGTGTCTGAGCTCTCCACCTCCAAGGTTATTGTTTTTCCGGTG 13329457 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| || ||||| Sbjct 13329456 AGTGTCTTGACAAAGATTTGCAT 13329434 >seq47 Length=18124089 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | || |||| ||| ||||| || ||||| || |||||||| ||||| Sbjct 4075165 CCTCCTCTCAGACGGAGAACCAAATGGAGCGTCGATTCCTTCTGGATGTTGTAATCGGCG 4075224 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||||||| || || || |||| || |||||||| ||| || Sbjct 4075225 AGTGTCCTTCCATCCTCCAATTGCTTCCCGGCGAAAATCAGACGCTGTTGATCCGGTGGG 4075284 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || || || || | | |||||| | | | | || ||| || || Sbjct 4075285 ATTCCTTCCTTATCCTGGATCTTCGCCTTCACATTGTCGATTGTATCGGAGGATTCGACC 4075344 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||| || || |||||||| || ||||| || || ||||||||||| Sbjct 4075345 TCTAGGGTTATTGTCTTTCCGGTTAGGGTTTTCACGAATATCTGCATTTT 4075394 >seq80 Length=21647715 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || |||||||||||||| ||||||||||| || | || | |||| Sbjct 2366773 AGAACCAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCGAGAGTCCTTCCGTCT 2366714 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || | ||| | || |||| ||| || || || | ||||||||||| Sbjct 2366713 TCAAGCTGCTTCCTAGCAAAGATGAGCCTCTGCTGATCTGGTGGGATTCCCTCTTTGTCC 2366654 Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || |||||| || || | | | | ||||| | ||| ||||| ||||||| Sbjct 2366653 TGAATCTTTGCT--TTAACATTGTCAATGGTGTCTGAGCTCTCAACTTCCAAAGTGATGG 2366596 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || ||||| || ||||| |||||||| Sbjct 2366595 TTTTACCAGTGAGCGTCTTCACAAAGATCTGCAT 2366562 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || || || || || ||||||||||| || | ||| | | ||| Sbjct 2367001 AGAACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAGTCAGCGAGAGTTCTTCCATCC 2366942 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||| || || ||| | ||||||| ||| ||||| || | || || ||||| Sbjct 2366941 TCGAGTTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGGATCCCTTCCTTGTCT 2366882 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | ||||| | |||| ||||| ||||| | Sbjct 2366881 TGGATCTTTGC--CTTTACGTTATCAATTGTGTCCGAGCTCTCCACTTCCAAAGTGATAG 2366824 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| || || || || || ||||||||||| Sbjct 2366823 TTTTTCCAGTGAGTGTCTTCACGAAAATCTGCAT 2366790 >seq75 Length=6520592 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || || |||||||| || ||||||||||| ||| Sbjct 967927 CCTCCACGGAGACGAAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCCGCC 967868 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | ||||||| | |||||| || || | || | || || |||||| || Sbjct 967867 AAGGTTCGGCCGTCCTCGAGTTGTTTACCGGCGAAGATCAACCTTTGCTGGTCCGGTGGA 967808 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || ||| || || | | | | ||||| | |||| Sbjct 967807 ATACCCTCCTTGTCCTGGATCTTGGCT--TTGACGTTGTCGATGGTGTCAGAGCTCTCCA 967750 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| || || |||||||| || |||||||| || || ||||| Sbjct 967749 CCTCAAGGGTTATTGTCTTTCCGGTTAGGGTTTTGACGAATATTTGCAT 967701 >seq72 Length=2807273 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || |||||||| || |||||||||||||| | ||| | ||| Sbjct 226373 AGGACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCC 226432 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||| || || || | ||||| ||||| |||||| || | || |||||||| Sbjct 226433 TCGAGTTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCCGGTGGGATACCTTCTTTGTCC 226492 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | | ||||| | |||| ||||| ||||| | Sbjct 226493 TGGATCTTGGC--CTTCACGTTGTCAATGGTGTCCGAGCTCTCCACTTCCAAAGTGATCG 226550 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || |||| || || || ||||||||||| Sbjct 226551 TCTTCCCTGTCAAAGTCTTAACGAAAATCTGCAT 226584 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || |||| ||| || || |||||||| || ||||||||||| ||| Sbjct 227042 CCACCACGGAGCCTGAGGACCAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCC 227101 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | | ||||| | ||| ||||| || | || | | ||| |||||| || Sbjct 227102 AAGGTTCGGCCATCCTCGAGTTGCTTGCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGG 227161 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || ||| || || | | | | ||||| | ||| Sbjct 227162 ATACCCTCCTTGTCCTGGATCTTAGCT--TTGACGTTGTCGATTGTGTCAGAGCTCTCAA 227219 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || ||||||| ||| || || || || ||||| Sbjct 227220 CCTCTAGGGTGATGGTCTTGCCGGTCAACGTCTTCACGAAGATTTGCAT 227268 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || |||| || || || |||||||| || ||||| ||||| ||| Sbjct 226586 CCACCACGTAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGCC 226645 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||| | ||| || || ||| | || || ||||| || ||| ||| Sbjct 226646 AAGGTGCGACCATCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGG 226705 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || || || ||| | |||||| | | | | ||||| | |||| Sbjct 226706 ATACCTTCCTTATCCTGAATCTTGGCCTTCACGTTGTCGATTGTGTCTGAGCTCTCCACC 226765 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || ||||| || ||||| || || ||||| ||||||||||| Sbjct 226766 TCCAGAGTAATGGTCTTGCCGGTAAGTGTCTTGACGAAAATCTGCAT 226812 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || || |||||||| || |||||||| || ||| Sbjct 226814 CCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGCC 226873 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| |||||||| || || || | || | | || |||||| || Sbjct 226874 AAGGTACGGCCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCCGGTGGG 226933 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| |||| ||| || || | | | | ||||| | ||| Sbjct 226934 ATACCTTCCTTGTCTTGGATTTTAGCT--TTGACATTGTCGATCGTGTCTGAGCTCTCAA 226991 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||||||||| || |||| ||| || || || |||||||| Sbjct 226992 CTTCCAAGGTGATGGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 227040 >seq92 Length=17487894 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| | ||| || |||| || || || ||||||||||| || ||||| || ||| Sbjct 10601032 CCACCTCTCAACCTAAGAACCAAGTGGAGAGTCGACTCCTTTTGAATATTGTAATCTGCC 10601091 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| | |||||| || ||| | || || | ||||| ||| ||| Sbjct 10601092 AATGTACGACCATCCTCAAGTTGTTTACCGGCAAAGATGAGTCTTTGTTGATCCGGAGGG 10601151 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || ||| || || | | | | |||||| | ||| Sbjct 10601152 ATCCCTTCCTTGTCTTGAATCTTAGCT--TTAACATTGTCAATAGTGTCTGAGCTCTCAA 10601209 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||| |||||| | ||||| || || |||||||| |||||||| Sbjct 10601210 CTTCTAGGGTTATGGTTGTACCGGTAAGAGTCTTGACAAATATCTGCAT 10601258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087210078400