Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq77 120 4e-22 >seq77 Length=18658056 Score = 120 bits (132), Expect = 4e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 63220 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63279 |||| |||||| ||||| | || | ||| || | |||| ||||||||| ||| |||| Sbjct 17991228 TTTGCCTCCTCCTTGATCAACATAACGAGCAGTATCATTAAAAACTCTCAGCATCGGAAC 17991169 Query 63280 AATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACT 63339 ||| ||||| ||||||||||| || || || || ||||| | |||||||| ||| Sbjct 17991168 AATTCCATTAGATGTACCATTCGTGCCACGAATGTAACTTCCCATTGCACGAATGTTATG 17991109 Query 63340 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 63399 || |||| || ||||| || || |||| || | || || ||| ||||| || Sbjct 17991108 AACCGATACGCCAATTCCACCAGCTGATTTACTTATAACAGCACACTCTTTCAACGTCTC 17991049 Query 63400 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 ||| || || || ||||||||||| |||| || | |||||||||| Sbjct 17991048 ATAAATCCCTTCAATACTATCATCTTTCATACAAATCAAAAAACAGCTA 17991000 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 62558 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62617 || |||||||| || || | |||||| ||||| |||||||| |||||||| | | | || Sbjct 17992459 AGGATAAACGCATCAGCGAGTCCTTGTACACCGATACCGATTGGTCTATGACGCATGTTC 17992400 Query 62618 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62673 ||| || || | || |||||||| ||| | |||||| || ||||||||||| Sbjct 17992399 GAGGTTCTCGCGGTTTCAACAGGATAATGATTCACATCTATTATCTTATTGAGATT 17992344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630732736000