Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq64 226 3e-54 seq110 91.5 2e-13 seq75 89.7 6e-13 seq66 87.8 2e-12 seq47 87.8 2e-12 seq107 86.0 7e-12 seq101 84.2 2e-11 seq80 84.2 2e-11 seq98 82.4 9e-11 seq92 82.4 9e-11 seq63 82.4 9e-11 >seq64 Length=9524166 Score = 226 bits (250), Expect = 3e-54 Identities = 510/751 (68%), Gaps = 13/751 (2%) Strand=Plus/Minus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 ||||| || || ||||| ||||| ||| ||| | |||| ||||| || | | ||| Sbjct 404410 CTATCCGCAACGAATTCGATGTATTGACTCATTAGGTCACGGTTCATCCCCACCA-ACGC 404352 Query 92984 ACAGGTA-GAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042 |||| | | |||||| || || || ||||||| | ||||| || | |||| Sbjct 404351 GCAGGGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCGACGGCGTCGCAGACGATTGA 404292 Query 93043 TATTACTCTACTATTTGGTGGTTTTTGTACGACATA-ATTGTACATTAAGCACGCAAAGT 93101 | | || | || || | | || || | | | | |||| || | |||||| || | Sbjct 404291 TTTCACGCG-CTCTTCCGAGAGCTTCGTCCTCAAGAGAGTGTAGATCAGGCACGCGAAAT 404233 Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 || ||||| ||||||||||| || |||||||||||| ||| ||||| || || | | Sbjct 404232 CGCAGTGTAAGCCTTCGTCTCGCGAGATCAACTCATTGGAGAAGGTTAATCCGGGCATGA 404173 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACCTTCC 93220 | || || ||||| ||||| || || | |||| |||||||| || || || |||||||| Sbjct 404172 GACCGCGCTTCTTAAGCCAGAAAATCG-AGCAGAAACTACCGGAGAAGAAGATACCTTCG 404114 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280 ||| || || ||||| ||||| ||||| || | | || | | | ||||||| | Sbjct 404113 ACGCAGGCGAAAGCCACGATACGCTCGGCGAAGGT--CTGAGAT-CCGTCGATCCATGTC 404057 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340 | ||||| | |||||| ||| | ||||| | || ||||| ||| ||| || | Sbjct 404056 ATCGCCCACTGGGCTTTCTTCGCGACGCAAGGGATGGTCTCGATGGCGCGAAAGAGATGG 403997 Query 93341 TCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGG 93400 |||| ||| | || |||||||| |||| | || ||||| || || ||| Sbjct 403996 TCTCTCTCCTTGTTGTCCTTGATGTATGTGTCGAGGAGGAGGCTGTACATCTCGGAGTGG 403937 Query 93401 ACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCT 93460 | ||||| || || || ||||| ||||||||| | || |||| || || || || Sbjct 403936 ATGTTCTCGATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC- 403878 Query 93461 TGAGA-AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 || | |||| | ||||| || || || || |||||||| || || ||||| Sbjct 403877 GGACATGAATCGGGAAGCCAGATTCTCGAGAACGATTCCGTCGGATGCGGCGAAGAAAGC 403818 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCG-GATAGAT 93578 | | || || || || ||| ||| | || || || || ||||||||| || | | Sbjct 403817 GAGCACGTGTTTGATGAAGTGTCGCTCGCCGTCGTTGAGATTCTCCCAATCGCGACCG-T 403759 Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638 ||| ||| | ||||||||| ||| | |||||||| ||||| || || || |||||||| | Sbjct 403758 CTTGTGACAAATCGACTTCCTCGGCCGTCCAAAAGGATGCCTCGGCCTTCTTGTACATCT 403699 Query 93639 CCCATATGTCTTGATATTGAATTGGAAATAT 93669 |||| || | | | || |||||||| || || Sbjct 403698 CCCAGATCTGTGGGTAGTGAATTGGGAACAT 403668 >seq110 Length=4329799 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/108 (80%), Gaps = 4/108 (4%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | Sbjct 2451740 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGG 2451681 Query 126321 GCGTGGGTTCGAACCCCACACCTGAC--AAATTATTATTGGAATTTTT 126366 |||||||||| || ||||| ||||| |||||||| || |||||| Sbjct 2451680 GCGTGGGTTCAAATCCCACTTCTGACAAAAATTATTTTTTTTATTTTT 2451633 >seq75 Length=6520592 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 |||||| |||||||| |||||||||||||||| ||||| |||||| | || || | || Sbjct 4207517 AGTCAGTATGGCCGAGAGGTCTAAGGCGCCAGACTTAAGTTCTGGTCCTCTTACGAGGGC 4207458 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||| |||||||| ||||||| Sbjct 4207457 GTGGGTTCAAACCCCACTGCTGACAA 4207432 >seq66 Length=12628956 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/99 (81%), Gaps = 9/99 (9%) Strand=Plus/Plus Query 126256 TCTATTTACAG---TCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC 126312 ||||| ||||| ||||| ||||||||||||||||||||||||| | ||| |||||| Sbjct 5536165 TCTATCTACAGAAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT-- 5536222 Query 126313 CCTC----GGGAGCGTGGGTTCGAACCCCACACCTGACA 126347 |||| | | |||||||||| |||||||| |||||| Sbjct 5536223 CCTCGTAAGAGGGCGTGGGTTCAAACCCCACTTCTGACA 5536261 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 8368965 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCG 8368906 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTA 126352 ||||||| || ||||| |||||| |||| Sbjct 8368905 TGGGTTCAAATCCCACTTCTGACATATTA 8368877 >seq47 Length=18124089 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/109 (80%), Gaps = 9/109 (8%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 17998812 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 17998869 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||||| || ||||| ||||| |||| ||||| |||||| || Sbjct 17998870 GCGTGGGTTCAAATCCCACTTCTGAC-AATTTCTATTG--ATTTTTATT 17998915 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 10954036 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 10954093 Query 126328 TTCGAACCCCACACCTGACAAAT 126350 ||| || |||||| ||| ||||| Sbjct 10954094 TTCAAATCCCACAGCTGTCAAAT 10954116 >seq107 Length=3545832 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 2007650 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 2007707 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| |||||||| |||||| Sbjct 2007708 GCGTGGGTTCAAACCCCACTTCTGACA 2007734 >seq101 Length=14560423 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 10342206 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 10342263 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 10342264 GCGTGGGTTCAAATCCCACTTCTGACAA 10342291 >seq80 Length=21647715 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/87 (83%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 17312904 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 17312847 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| | ||||||| Sbjct 17312846 TTCAAATCCCACAGCTGTC-AATTATT 17312821 >seq98 Length=12372032 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 7080286 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 7080343 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| || | |||| Sbjct 7080344 TTCAAATCCCACAGCTGTCAGAATATT 7080370 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGT 126328 || |||||||||||||||||||||||||||||| | |||||| || | |||||||| Sbjct 7080470 AGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGGT 7080527 Query 126329 TCGAACCCCACACCTGACAAAT 126350 || || |||||| ||| ||||| Sbjct 7080528 TCAAATCCCACAGCTGTCAAAT 7080549 >seq92 Length=17487894 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/106 (79%), Gaps = 9/106 (8%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | | Sbjct 14332552 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGGG 14332495 Query 126322 CGTGGGTTCGAACCCCACACCTGACA-AATTATTATTGGAATTTTT 126366 ||||||||| || ||||| |||||| || ||||| ||||||| Sbjct 14332494 CGTGGGTTCAAATCCCACTTCTGACATTGTTTTTATT--AATTTTT 14332451 >seq63 Length=1788390 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 531475 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 531532 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 531533 GCGTGGGTTCAAATCCCACTTCTGACA 531559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859686278400