Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq75 95.1 1e-14 seq101 87.8 2e-12 seq92 84.2 2e-11 seq80 82.4 6e-11 >seq75 Length=6520592 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| || ||||| | |||||||| ||||| ||| | || |||| | | Sbjct 967473 ATGCAAATTTTCGTTAAAACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCC 967532 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | | || ||| || || ||||| ||||| ||||| ||||| Sbjct 967533 GACACGATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAG 967592 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||||||||| | ||||| || ||||||||||| | || |||| ||||| || Sbjct 967593 CAAAGGCTTATCTTCGCGGGAAAGCAATTGGAAGACGGTCGCACGTTGGCTGATTACAAC 967652 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||| || || || || || || | || || ||||| Sbjct 967653 ATCCAGAAGGAATCCACCCTTCACTTGGTTCTGAGGCTTCGTGGTGG 967699 >seq101 Length=14560423 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| || ||||| || | ||||| || ||||| || | ||| ||| | Sbjct 13329205 AATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACCATCACTCTTGAAGTTGAAAGCTC 13329264 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || | ||| | | || ||| || ||| ||||||||||| |||| ||||| Sbjct 13329265 TGACACCATTGACAACGTTAAAGCTAAGATTCAAGACAAAGAAGGTATTCCTCCGGATCA 13329324 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||||| ||||| | || || || ||| | |||||| | |||| | || || || || Sbjct 13329325 GCAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGAAGAACTCTCGCTGACTACAA 13329384 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || || || ||||| ||| | ||||| || ||||| Sbjct 13329385 CATCCAAAAGGAGTCCACTCTCCATTTGGTGCTTCGTCTTCGTGGTGG 13329432 >seq92 Length=17487894 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| ||||| | ||||| |||||||||||| | ||| ||| | Sbjct 10601030 ATGCAGATATTTGTGAAAACCCTCACCGGTAAAACCATTACCCTAGAAGTGGAGAGCTCA 10600971 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111305 || || ||| | | || ||| || ||| ||||| ||||| | |||| | ||||| Sbjct 10600970 GACACTATTGACAACGTTAAAGCTAAGATTCAAGACAAGGAAGG-GATCCCTCCGGATCA 10600912 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||| || || || | || || |||||| | || ||| | ||| | || ||||| || Sbjct 10600911 ACAGAGACTCATCTTCGCAGGTAAACAACTTGAGGATGGTCGAACGCTTGCAGATTACAA 10600852 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||| ||||| || | || | ||||| || ||||| Sbjct 10600851 CATCCAGAAGGAATCAACACTTCACCTTGTTCTACGTCTTCGTGGTGG 10600804 >seq80 Length=21647715 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| |||||||| || | || ||||||||||| || | ||| ||| Sbjct 2366333 AATGCAAATCTTTGTCAAGACTCTAACTGGCAAAACCATCACACTAGAAGTTGAAAGTTC 2366392 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | ||| | | || ||| || ||| ||||||||||| | || ||||| Sbjct 2366393 TGATACCATTGACAATGTCAAAGCTAAGATTCAGGACAAAGAAGGAATCCCTCCGGATCA 2366452 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || || ||||| | ||| || || |||| || ||| | || | || ||||| || Sbjct 2366453 GCAGAGACTTATCTTTGCTGGAAAGCAATGAGAGGATGGTCGCACACTCGCTGATTACAA 2366512 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| ||||| || |||||||| || | || | ||||| || ||||| Sbjct 2366513 TATTCAAAAGGAGTCTACACTTCACCTTGTCCTTCGTCTTCGTGGTGG 2366560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423039175072000