Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq126 98.7 7e-16 seq139 91.5 1e-13 seq92 89.7 4e-13 seq80 89.7 4e-13 seq64 89.7 4e-13 >seq126 Length=8766530 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| | ||||| |||| || ||||| |||||| | ||| || | | Sbjct 5178213 AATGCAAATATTTGTGAAAACCCTAACTGGTAAAACAATTACCTTAGAAGTTGAGAGCTC 5178154 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || ||| | | | | | ||| || ||| || || || || | ||| |||| Sbjct 5178153 GGACACGATTGACAACGTCAAGGCGAAGATTCAAGACAAGGAAGGAATCCCTCCGGACCA 5178094 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||||||| ||||| ||||| ||||| || || ||| ||| | || ||||| || Sbjct 5178093 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCACTCTTGCAGATTATAA 5178034 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 ||||||||||||||| || ||||| Sbjct 5178033 TATTCAGAAGGAATCAACACTTCA 5178010 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || | || ||||| ||||| || |||| ||| | | Sbjct 5178668 ATGCAAATCTTCGTGAAGACTCTTACAGGCAAGACCATAACATTGGAGGTTGAAAGCTCC 5178609 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||||| | | | | || ||||| || ||||| || | ||| | ||||| Sbjct 5178608 GACACGGTTGACAACGTCAAAGCTAAAATCCAGGAGAAAGAAGGAATTCCTTCAGACCAA 5178549 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | || ||||| || ||||| |||||||| | || ||| ||||||||| Sbjct 5178548 CAGAGATTGATATTTGCAGGGAAACAGTTAGAAGATGGACGTACATTGGGTGATTACAAT 5178489 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || |||||||| ||||| || |||| |||||||| |||| || Sbjct 5178488 ATCCAAAAGGAATCGACTCTCCACTTGGTTCTACGTTTAAGAGGTGG 5178442 >seq139 Length=20634497 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || || || ||||| || ||||| || | || ||| | | Sbjct 14478028 ATGCAGATATTTGTCAAGACGTTGACGGGTAAGACCATAACACTTGAGGTGGAGAGCTCG 14477969 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | ||| || ||| || ||||| || | ||| ||||| Sbjct 14477968 GATACGATTGACAATGTAAAGGCGAAGATTCAGGACAAAGAAGGGATCCCTCCGGACCAA 14477909 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| |||||||| || ||||| || || ||| || |||| |||||||| Sbjct 14477908 CAGAGACTAATCTTTGCCGGAAAACAGCTCGAGGATGGTCGCGCTTTGGCGGATTACAAC 14477849 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||| || || ||||||||| | || | ||| | || || ||| Sbjct 14477848 ATTCAGAAAGAGTCAACTCTTCATCTTGTTCTCCGTCTCCGTGGTGGA 14477801 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || |||||||| | ||| | |||| || |||||||| || ||||| || || || ||| Sbjct 11242559 GACAAAGAGGGAATCCCTCCAGACCAGCAAAGACTTATATTCGCTGGTAAGCAGCTTGAA 11242618 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| || | |||||||||||||| ||||| || || ||||| ||| |||| || Sbjct 11242619 GATGGTCGCACGCTTGCCGATTACAATATCCAGAAAGAGTCCACTCTCCATTTGGTGTTG 11242678 Query 22047 CGTTTACGAGGAGGA 22061 ||| | || || ||| Sbjct 11242679 CGTCTTCGTGGTGGA 11242693 >seq92 Length=17487894 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | ||||| | || || |||||||||||| | ||| ||| | || Sbjct 10601030 ATGCAGATATTTGTGAAAACCCTCACCGGTAAAACCATTACCCTAGAAGTGGAGAGCTCA 10600971 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | |||| || ||| || || || || | ||| | ||| Sbjct 10600970 GACACTATTGACAACGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCCTCCGGATCAA 10600911 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||| || || |||||||| || ||| ||| | || |||||||| Sbjct 10600910 CAGAGACTCATCTTCGCAGGTAAACAACTTGAGGATGGTCGAACGCTTGCAGATTACAAC 10600851 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || ||||| | || ||||| | || || || Sbjct 10600850 ATCCAGAAGGAATCAACACTTCACCTTGTTCTACGTCTTCGTGGTGG 10600804 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || |||| || | || || || ||||||||| | ||| ||| | || Sbjct 12099585 ATGCAAATCTTCGTTAAGACTCTTACAGGGAAGACCATTACCTTAGAAGTTGAAAGCTCA 12099644 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| || ||| |||||||| || | ||| | | ||| Sbjct 12099645 GACACAATAGACAACGTAAAGGCTAAGATTCAAGATAAAGAAGGAATCCCTCCAGATCAA 12099704 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||||||||||||||| |||||||| || ||| || |||| |||||||| Sbjct 12099705 CAAAGACTTATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACATTGGCTGATTACAAC 12099764 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || | || || || |||||||| |||| Sbjct 12099765 ATCAAAAAAGAGTCAACTCTTCACTTGGT 12099793 Score = 86.0 bits (94), Expect = 4e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 ||||||| ||||||||||||| ||||||||| |||||||| | ||| || || | Sbjct 12099472 ACCAACAAAGACTTATCTTTGTCGGCAAACAATTAGAAGATGGACGTACTTTGAATGAAT 12099531 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||| || |||||||| ||||| || |||| | ||||| |||| || Sbjct 12099532 ACAATATCCAAAAGGAATCAACTCTCCACTTGGTCCTGCGTTTGAGAGGTGG 12099583 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || | || || || ||||| ||| | ||| ||| | || Sbjct 10601486 ATGCAAATCTTTGTTAAGACTCTTACCGGGAAGACCATAACCCTAGAAGTTGAAAGCTCA 10601427 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| || ||| |||||||| || | ||| | ||||| Sbjct 10601426 GACACCATAGACAACGTCAAGGCTAAGATTCAAGATAAAGAAGGAATCCCTCCAGACCAA 10601367 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||||||||||||||| |||||||| || ||| || || | |||||||| Sbjct 10601366 CAAAGACTTATCTTTGCTGGTAAACAACTCGAGGATGGTCGTACATTGTCGGATTACAAC 10601307 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || || || || || || || || |||| Sbjct 10601306 ATCCAAAAAGAGTCAACGCTCCACTTGGT 10601278 >seq80 Length=21647715 Score = 89.7 bits (98), Expect = 4e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||||| |||||||||||||| || ||||| || ||| || |||| | || || | Sbjct 2366905 ACCAGCAGAGGCTTATCTTTGCTGGGAAGCAACTCGAGGATGGAAGAACTCTCGCTGACT 2366964 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||| || ||||| ||||| ||||||||| |||| | ||| | || || || Sbjct 2366965 ACAACATCCAGAAAGAATCAACTCTTCATTTGGTTCTTCGTCTTCGTGGTGG 2367016 >seq64 Length=9524166 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || || || || | || || ||||||||||| ||||| |||| | || Sbjct 3905540 ATGCAGATTTTCATCAAGACCCTCACCGGAAAAACCATTACTTTGGAAGTGGAAAGCTCA 3905599 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | | ||| || || || || || || | || | |||| Sbjct 3905600 GACACGATTGATAACGTGAAGGCTAAGATACATGACAAGGAAGGGATCCCACTTGACCAG 3905659 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| || || | ||| ||||| || || ||| |||| |||| ||||||||| Sbjct 3905660 CAAAGACTCATTTTCGGTGGGAAACAGCTTGAGGATGGTCGAACTTTGGCTGATTACAAT 3905719 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 |||||||||||||| |||||||| |||| Sbjct 3905720 ATTCAGAAGGAATCGACTCTTCACTTGGT 3905748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358124101656640