Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq64 179 7e-40 >seq64 Length=9524166 Score = 179 bits (198), Expect = 7e-40 Identities = 487/733 (66%), Gaps = 28/733 (4%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| ||||| |||||||| | || || Sbjct 403692 ATCTGGGAGATGTACAAGAAGGCCGAGGCATCCTTTTGGACGGCCGAGGAAGTCGATTTG 403751 Query 42360 GC-CAAGGACACGGCCGGC--TGGGAG----TCACTGTCTGAGAACGAAAAGTTTTTCCT 42412 | |||| |||| || |||||| ||| | | | || ||| | ||| | Sbjct 403752 TCACAAG---ACGGTCGCGATTGGGAGAATCTCAACGACGGCGAGCGACAC----TTCAT 403804 Query 42413 CAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCAC 42472 |||| || | || || ||||||||||| || ||||| || || ||||| ||||| | Sbjct 403805 CAAACACGTGCTCGCTTTCTTCGCCGCATCCGACGGAATCGTTCTCGAGAATCTGGCTTC 403864 Query 42473 CAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAG 42531 | | |||||| || || || || |||||||| ||| |||||||| |||||||| | Sbjct 403865 CCGATTCATGTCCGATGTTCAAGTCTCGGAGGCGCG-TGCTTTCTACGGTTTCCAGATCG 403923 Query 42532 CCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATC 42591 | || |||||| | ||||| ||| ||||| | || ||| |||| |||||| ||| Sbjct 403924 CGATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGACACATACATCAAGGACA 403983 Query 42592 CCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGG 42651 | ||| | || || || ||||| ||||| || || ||| || |||||| | Sbjct 403984 ACAAGGAGAGAGACCATCTCTTTCGCGCCATCGAGACCATCCCTTGCGTCGCGAAGAAAG 404043 Query 42652 CGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCA-ACGTTCGGCGAGAGGCTGGT 42709 | | |||||| | | |||||||| | || | || || |||| |||| | | || Sbjct 404044 CCCAGTGGGCGATGACATGGATCGA-----CGGATCTCAGACCTTCGCCGAGCGTATCGT 404098 Query 42710 AGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCT 42769 || || || |||||| || ||||||||||| || ||| ||| || |||||||| Sbjct 404099 GGCTTTCGCCTGCGTCGAAGGTATCTTCTTCTCCGGTAGTTTCTGCTCGATTTTCTGGCT 404158 Query 42770 CAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACG 42828 ||| || ||| || ||||||||| | |||||||| || || | ||| | |||| Sbjct 404159 TAAGAAGCGCGGTCTC-ATGCCCGGATTAACCTTCTCCAATGAGTTGATCTCGCGAGACG 404217 Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 | || | || | || || || || |||| ||| | | | | ||| |||| || Sbjct 404218 AAGGCTTACACTGCGATTTCGCGTG---CCTGATCTACACTCTCTTGAGGACGAAGCTCT 404274 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 || | ||||| || | ||| || || ||||| |||||||||| |||||| | Sbjct 404275 CGGAAGAGCGCGTGAAATCAATCGTCTGCGACGCCGTCGAGATCGAGAGGGAGTTTGTGT 404334 Query 42949 CGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCC 43008 | |||| ||| | |||| || ||||||| ||||| ||| | | |||||| Sbjct 404335 GCGACGCGCTTCCCTGCGCGTTGGTGGGGATGAACCGTGACCTAATGAGTCAATACATCG 404394 Query 43009 AGTACGTCGCCGA 43021 | | ||| || || Sbjct 404395 AATTCGTTGCGGA 404407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337311321600