Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq126 123 2e-23 seq77 89.7 5e-13 >seq126 Length=8766530 Score = 123 bits (136), Expect = 2e-23 Identities = 208/301 (69%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 20216 TGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAA 20275 ||| |||| || || || |||| || |||||||| || || |||| | || || Sbjct 4332195 TGAGTAAAGTCACCAGGAACAAGATCACAGACATGAGCGAGGATGCAAGTAAGAAGAGAG 4332254 Query 20276 TAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGA 20335 ||| ||||||||||| || || || | |||||||| | || | |||||||| ||| Sbjct 4332255 TAGGAAGCAATGTTAAACGGTACACCAAGGCCCATGTCCGCTGAACGCTGATACATTTGA 4332314 Query 20336 CAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCC 20395 || || ||||| || || |||||||| || || |||| |||||| || ||||||||| Sbjct 4332315 CATGAGAGCTCTCCTTCTGCTACATAGAACTGTGCAAACATGTGACATGGAGGAAGCGCC 4332374 Query 20396 ATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTA 20455 ||||| | || | || ||||| || | | ||||| | || ||| | ||||| Sbjct 4332375 ATCAATTTGAGATCAGAAGGATTCCAAGCTGATAATATGATGCGTCGATCATCAGGATTG 4332434 Query 20456 TTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCA 20515 || || || || | | | | | ||| |||||||| ||||| ||||| |||||| Sbjct 4332435 TTCTTGATCTTGTCGATTACATCCACGAGTTGATCAAACCCTTGGCCAGTATAATCAGCA 4332494 Query 20516 T 20516 | Sbjct 4332495 T 4332495 >seq77 Length=18658056 Score = 89.7 bits (98), Expect = 5e-13 Identities = 185/271 (68%), Gaps = 12/271 (4%) Strand=Plus/Minus Query 20250 GAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCA 20309 ||| | |||| ||||| ||||| || ||||||||||| || || || | ||||| Sbjct 13060730 GAGAATGCATGTAAGTAAAGAG----TACGAAGCAATGTTAAACGGTACACCGAGACCCA 13060675 Query 20310 TGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGAC 20369 | || | || | ||||||| ||||| ||||| || || | ||||| ||||| || Sbjct 13060674 TATCAGCTGAACGTTGATACATTTGACATGAAAGTTCTCCATTCGCTACGTAAAACTGTG 13060615 Query 20370 ATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACA 20429 |||| ||| || || ||||||||||||| | || | || ||||| || | | Sbjct 13060614 CAAACATGTGGCATGGAGGAAGCGCCATCAGTTTAAGATCAGATGGATTCCAAGCTGAGA 13060555 Query 20430 TAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGACAAT 20485 | || || | || ||| | ||||| || || || | ||| || || || ||| Sbjct 13060554 TTATAATCCGTCGATCATCAGGATTGTTCTTGATCTTGTTAAT-TAC-ATCTA--ACAGC 13060499 Query 20486 TGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 || ||||| || || |||||||| ||||||| Sbjct 13060498 TGATCAAATCCTTGTCCTGTATAATCAGCAT 13060468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441371917254400