Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq47 111 1e-19 seq72 84.2 2e-11 seq139 82.4 6e-11 seq80 82.4 6e-11 >seq47 Length=18124089 Score = 111 bits (122), Expect = 1e-19 Identities = 169/235 (72%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || || |||| ||| ||||| |||||||| ||||||||||| | | Sbjct 4075165 CCTCCTCTCAGACGGAGAACCAAATGGAGCGTCGATTCCTTCTGGATGTTGTAATC-GGC 4075223 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | |||| | | || ||||||||||| ||||| || ||||| ||||| |||||| || Sbjct 4075224 GAGTGTCCTTCCATCCTCCAATTGCTTCCCGGCGAAAATCAGACGCTGTTGATCCGGTGG 4075283 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTC 34076 | | || || ||| || || ||| || | || | |||| | ||||| Sbjct 4075284 GATTCCTTCCTTATCCTGGATCTTCGCCTTCACATTG---TCGATTGTATCGGAGGATTC 4075340 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 | || | |||||||| ||||||||||| |||||||| || || ||||||||| Sbjct 4075341 GACCTCTAGGGTTATTGTCTTTCCGGTTAGGGTTTTCACGAATATCTGCATTTTT 4075395 >seq72 Length=2807273 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| || || |||||||| || ||||||||| ||||||||||| ||||| || Sbjct 227279 AGCCTTAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAATCCGCCAAGGTACGA 227338 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| ||||| ||||| ||||| || || || | |||||||||| || | | ||| Sbjct 227339 CCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATTCCTTCT 227398 Query 34030 TTGTCC 34035 |||||| Sbjct 227399 TTGTCC 227404 >seq139 Length=20634497 Score = 82.4 bits (90), Expect = 6e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||||| ||||| |||| || || || || ||| ||||||||||||||||| Sbjct 14478484 ACCACCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTTCTTTTGAATGTTGTAATCTGC 14478543 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 |||| || | || || | ||| ||||||||||| ||||| | ||||| || | Sbjct 14478544 CAATGTACGACCATCTTCAAGTTGTTTGCCGGCAAAGATCAGTCTTTGCTGGTCTGAAGA 14478603 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | || ||||||||| || ||| ||| | | ||| | || | | |||| Sbjct 14478604 AATGCCTTCTTTGTCCTGGATCTTTGCCTTGACGTTTTCCACTGTGTCGGAACTTTCGAC 14478663 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTG 34124 || | ||||| || || || || || || || || |||||||| Sbjct 14478664 CTCTAAGGTTATGGTCTTGCCCGTGAGAGTCTTTACGAAGATTTG 14478708 >seq80 Length=21647715 Score = 82.4 bits (90), Expect = 6e-11 Identities = 153/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || ||||| || |||||| ||||| |||||||| || | | || Sbjct 2366551 AGACGAAGGACAAGGTGAAGTGTAGACTCCTTTTGAATATTGTAATCAGCGAGTGTGCGA 2366492 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || ||||||| || ||||| || || | |||||||||| || | | ||| Sbjct 2366491 CCATCCTCTCATTGCTTTCCAGCAAAGATAAGTCTCTGCTGATCCGGAGGGATTCCTTCT 2366432 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACT---ATCAGTAGATTCGCATTCGACC 34086 |||||| ||| || |||| || | | || | ||||| | ||| ||| | Sbjct 2366431 TTGTCCTGAATCTTA-GCTT--TGACATTGTCAATGGTATCAGAACTTTCAACTTCTAGT 2366375 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || || ||||| || ||||| || || ||||||||||||||| Sbjct 2366374 GTGATGGTTTTGCCAGTTAGAGTCTTGACAAAGATTTGCATT 2366333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397061625728320