Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq64 136 9e-27 seq110 89.7 1e-12 >seq64 Length=9524166 Score = 136 bits (150), Expect = 9e-27 Identities = 569/877 (65%), Gaps = 31/877 (4%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| || || || || | || ||||| ||||| |||||||| | |||| |||||||| Sbjct 403671 TTCCCAATTCACTACCCACAGATCTGGGAGATGTACAAGAAGGCCGAGGCATCCTTTTGG 403730 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACG-TCGTCGACTGGCGCGAGAAACTCAATGA 242993 || |||||||||| | || ||||| ||| ||| ||| ||||| ||||| || Sbjct 403731 ACGGCCGAGGAAGTCGATTTGTCACAAGACGGTCG-CGATTGG---GAGAATCTCAACGA 403786 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 || ||| || || |||||||||||| | || | ||| ||||| | ||||| || || || Sbjct 403787 CGGCGAGCGACACTTCATCAAACACGTGCTCGCTTTCTTCGCCGCATCCGACGGAATCGT 403846 Query 243054 GATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || |||||| || || | ||| || || || | ||||| || | Sbjct 403847 TCTCGAGAATCTGGCTTCCCGATTCA-TGTCCGATGTTCAAGTCTCGGAGGCGCGTGCTT 403905 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 | || | || ||| | | ||| ||||| || || || || || ||| Sbjct 403906 TCTACGGTTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCG 403965 Query 243173 ACGCGCTTATTTC-AGATGAACAA-GAGCGAAACGAGCT-TTTCGACGCCATCGAAAACA 243229 | | | || || || ||||| ||| || || | || ||||| ||||||||| | || Sbjct 403966 A--CACATACATCAAGGACAACAAGGAGAGAGACCATCTCTTTCG-CGCCATCGAGACCA 404022 Query 243230 TTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGG---TAAAT 243286 | || || || || || | ||||| || ||| | || ||| | | Sbjct 404023 TCCCTTGCGTCGCGAAGAAAGCCCAGTGGGCGATGACATGGATCGA---CGGATCTCAGA 404079 Query 243287 CATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTT 243346 | || || |||||| |||| || | | ||||| |||||||| | || ||||| |||| Sbjct 404080 CCTTCGCCGAGCGTATCGTGGCTTTCGCCTGCGTCGAAGGTATCTTCTTCTCCGGTAGTT 404139 Query 243347 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 243406 ||||| | || || ||||| ||| ||| | ||||| || | | || || | Sbjct 404140 TCTGCTCGATTTTCTGGCTTAAGAAGCGCGGTCTCATGCCCGGATTAACCTTCTCCAATG 404199 Query 243407 AGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAAG 243465 |||| ||| || ||||| ||| | ||| | |||| ||| || || || | Sbjct 404200 AGTTGATCTCGCGAGACGAAGGCTTACACTGCGATTTCGCGTG-CCTGATCTACAC-TCT 404257 Query 243466 CTCCAGAAC-AAGCTACCATTCGAAA---CG-GTCAAACAAATCATCACAGAAGCAGTTG 243520 || || || ||||| ||| || || || ||| |||| || || || || | Sbjct 404258 CTTGAGGACGAAGCT----CTCGGAAGAGCGCGTGAAATCAATCGTCTGCGACGCCGTCG 404313 Query 243521 AAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTG 243580 | | ||| | ||| || | |||||||| |||| ||| | | | || |||||| || Sbjct 404314 AGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCCTGCGCGTTGGTGGGGATGAACCGTG 404373 Query 243581 AACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATG 243640 | || ||| | || |||||||||||||| || || | || | |||||||| || | Sbjct 404374 ACCTAATGAGTCAATACATCGAATTCGTTGCGGATAGGCTTCTGGGTGCGCTTGGATACG 404433 Query 243641 AGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGA 243700 || |||||| || || |||| | ||||| || || |||||||| |||| Sbjct 404434 GCAAGGTGTACGGTGTGGCTAATCCGTTTGATTGGATGGAACTTATCTCGCTTCAGGGGA 404493 Query 243701 AAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 |||| ||||||||||| ||| | || | ||||| || Sbjct 404494 AAACAAACTTCTTCGAGAAGAGAGTTGGCGATTACCA 404530 >seq110 Length=4329799 Score = 89.7 bits (98), Expect = 1e-12 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 30968 AAGGCCCACGAATGTTCCTTGCGAATTGCTTCTTCTTCCTCGGGTGTGATCTCGTTTTCG 31027 || |||||| || |||| |||||| ||||||||||||||||||||| ||||| | | Sbjct 2842214 AAAGCCCACTGATTTTCCCTGCGAACCTCTTCTTCTTCCTCGGGTGTGAAATCGTTCTTG 2842155 Query 31028 ATACCGAACACTTTTCGAATCTCTTCCGGAGtttttccttttattttttCAGCGATAGCT 31087 || ||| | ||||||| || || |||||||| |||| || | ||||||| | | Sbjct 2842154 ATGTTGAAGGTTGTTCGAATTTCCTCTGGAGTTTTGTCTTTGATCATGTCAGCGACTGTT 2842095 Query 31088 TGACATAGAACATCAAGCATACTCTTTATGTTCAAGAAATTCGCTCCTTGAATCAGTTCG 31147 ||||| | |||||| | || || || | ||||||| | |||| ||||| Sbjct 2842094 TGACAAGTTAGATCAAGAAGGCTTGCGATATTGAGATAATTCGCAGCGAGAATGAGTTCA 2842035 Query 31148 AAGA 31151 |||| Sbjct 2842034 AAGA 2842031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102877739096000