Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq64 123 3e-23 seq66 95.1 1e-14 >seq64 Length=9524166 Score = 123 bits (136), Expect = 3e-23 Identities = 162/224 (72%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || ||||| || ||||| | ||||| |||||| | || ||||||||||| |||||| Sbjct 404221 CCTTCGTCTCGCGAGATCAACTCATTGGAGAAGGTTAATCCGGGCATGAGACCGCGCTTC 404162 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | ||||||||||| || || || ||||||||||| || || || || ||||| Sbjct 404161 TTAAGCCAGAAAATCGAGCAGAAACTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAA 404102 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 || | | ||||||||| |||| | || | || | ||| ||||||||||||| Sbjct 404101 GCCACGATACGCTCGGCGAAGGTCTGAGA---TCCGTCGATCCATGTCATCGCCCACTGG 404045 Query 127718 GCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761 || || ||| ||| || |||| ||||| ||| || |||||| Sbjct 404044 GCTTTCTTCGCGACGCAAGGGATGGTCTCGATGGCGCGAAAGAG 404001 >seq66 Length=12628956 Score = 95.1 bits (104), Expect = 1e-14 Identities = 196/288 (68%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || ||||| || ||||| | ||| | || |||||| |||||| | || || || Sbjct 1472727 CGGTCAAACCGTCCTGGTCTGAGCAAAGCAGAGTCAAGAATATCAGCTCTATTGGTTGCA 1472668 Query 12762 GCGATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAGTTGA 12818 || | |||| | || || |||| || || |||||||||||||||||||| ||| Sbjct 1472667 GCAACTACAATAACACCGGT---GTTACCTTCAAATCCATCCATCTCAGTCAAGAGCTGA 1472611 Query 12819 TTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTGCTTACCG 12878 |||| || ||||| | |||||| || | | ||| | | | |||| |||| Sbjct 1472610 TTGAGAGTCTGTTCTCTTTCATCGTTACCTCCACCAATACCGGTTCCTCTTTGCCTACCA 1472551 Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGC-AACTTCAAA 12937 || || || ||||| |||| || || || || || ||||| ||| ||| ||| Sbjct 1472550 ACAGCATCGATTTCATCAACAAAGACAATGCAGGGAGCGTTTTCTTTGGCTTTCTTGAAA 1472491 Query 12938 GATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 | ||| || ||||| |||||| ||||| ||||||||||| ||||| Sbjct 1472490 -AGATCACGGACTCTTGAGGCACCAACACCGACAAACATCTCAACAAA 1472444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505972985600