Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq75 131 2e-25 seq101 116 4e-21 seq72 113 5e-20 seq139 104 3e-17 seq80 82.4 9e-11 >seq75 Length=6520592 Score = 131 bits (144), Expect = 2e-25 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| |||||||| |||| ||||||||||| |||||||| Sbjct 2456200 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGTCCGTCTTCGAGCTGCTTTCCGGCGAA 2456259 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | | |||||||| ||||||| ||||| | Sbjct 2456260 AATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTGACATT 2456319 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || || || | ||||| || || ||||| || ||||| || Sbjct 2456320 GTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTCTTACCCGTTAGGGTTTTCAC 2456379 Query 46582 AAAGATTTGCATTTT 46596 ||||| ||||| || Sbjct 2456380 GAAGATCTGCATCTT 2456394 >seq101 Length=14560423 Score = 116 bits (128), Expect = 4e-21 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | |||||| |||| || | || |||||| |||||||||||||| | Sbjct 1861029 TGCCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAGTCAG 1860970 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || |||| || |||||||| |||||||| ||||| | ||||||||| | | Sbjct 1860969 CCAATGTTCGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTG 1860910 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGAT 46540 | | | |||||||| |||||| |||| ||| | | | ||||| |||| Sbjct 1860909 GGATACCTTCCTTGTCTTGGATCTTGGCTTTGA-CGTTGTCGATGGTGTCTGAGCTC--- 1860854 Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| |||||||| ||||| |||| ||| || || ||||||||||| Sbjct 1860853 TCAACTTCCAAGGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATTTGCAT 1860801 Score = 107 bits (118), Expect = 2e-18 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||| |||||||||||| |||||| ||||||||||| || | | ||| || | Sbjct 13329877 ACGCAACACAAGATGCAATGTAGACTCCTTCTGGATATTGTAATCCGCCAAAGTCCGACC 13329818 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||| || |||||||| || | | ||||||||| | || | | |||||| Sbjct 13329817 ATCCTCAAGCTGTTTTCCGGCGAAGATAAGTCTCTGCTGGTCCGGTGGGATCCCCTCCTT 13329758 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 |||| ||||| ||||| | | | ||||| |||| || || |||| || Sbjct 13329757 GTCCTGAATCTTAGCCTTGACATTGTCTATTGTGTCTGAGCTC---TCAACCTCCAAAGT 13329701 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || || || || || || || || || ||||| Sbjct 13329700 GATGGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 13329662 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||||| ||| | |||| ||| | ||| ||||| ||||| ||||| |||| | Sbjct 13329204 CCTCCTCTTAGACGGAGGACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCGGCT 13329145 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| || | || || | ||| || |||||||| ||||| | ||||| || | || Sbjct 13329144 AAAGTACGGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCCGGAGGA 13329085 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTC---GCTCGATTC 46542 | | |||||||| |||||| ||| | ||| | | | ||||| |||| || Sbjct 13329084 ATTCCTTCCTTGTCTTGGATCTTTGCCTTAA-CGTTGTCGATGGTGTCAGAGCTC---TC 13329029 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||||| ||||| || || ||||| || ||||||||||| Sbjct 13329028 GACCTCGAGAGTGATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 13328978 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| || | || ||||| || || |||||||||| || ||||| | Sbjct 1861244 ACGCAACACCAAGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGACC 1861185 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| |||||||| || | |||||||| || | || | | ||||| Sbjct 1861184 ATCCTCAAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGATCCGGAGGGATACCTTCCTT 1861125 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553 ||| |||||| ||| | ||| | | | ||||| |||| ||||| || | | Sbjct 1861124 ATCCTGGATCTTGGCCTTCA-CGTTGTCGATTGTGTCTGAGCTC---TCCACCTCAAGAG 1861069 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || ||||| || || || || || ||||||||||| Sbjct 1861068 TAATTGTCTTGCCGGTAAGGGTCTTCACGAAGATTTGCAT 1861029 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| ||| | || ||| || ||||||||||| || | | || || | Sbjct 13330105 ACGCAACACCAAATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCCAAGGTCCGACC 13330046 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||| || ||||||||||||| | ||||||||| | || | | ||||| Sbjct 13330045 ATCCTCAAGCTGTTTTCCGGCGAATATCAGTCTCTGCTGGTCCGGTGGGATCCCTTCCTT 13329986 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 |||| ||||| ||||| | | | |||||| |||| || || |||| || Sbjct 13329985 GTCCTGAATCTTAGCCTTGACATTATCAATCGTGTCTGAGCTC---TCAACCTCCAAGGT 13329929 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || |||| || || |||||||| ||||| Sbjct 13329928 AATAGTCTTACCTGTCAATGTCTTCACAAAGATCTGCAT 13329890 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| |||||||| ||||| || | | || || | || |||||||| || |||||||| Sbjct 13329625 CTCTTTTTGGATGTTGTAATCCGCCAAGGTCCGACCATCCTCGAGCTGTTTTCCGGCGAA 13329566 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||| | | ||||||||| | || | | |||||||| |||||| ||| | | Sbjct 13329565 TATGAGTCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATT 13329506 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| ||||| |||| || || ||||| || || || || || Sbjct 13329505 ATCAATGGTGTCTGAGCTC---TCCACCTCCAAGGTTATTGTTTTTCCGGTGAGTGTCTT 13329449 Query 46579 AACAAAGATTTGCAT 46593 |||||||||||||| Sbjct 13329448 GACAAAGATTTGCAT 13329434 >seq72 Length=2807273 Score = 113 bits (124), Expect = 5e-20 Identities = 155/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | || |||||| ||||| |||||||| | | || || | || ||| Sbjct 227060 ACCAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTTCGGCCATCCTCG 227119 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || |||||||||||||| ||||| | ||||||||| | || | | |||||||||| | Sbjct 227120 AGTTGCTTGCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGG 227179 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 ||||| |||| ||| | | | ||||| |||| || || || | |||||||| Sbjct 227180 ATCTTAGCTTTGA-CGTTGTCGATTGTGTCAGAGCTC---TCAACCTCTAGGGTGATGGT 227235 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| ||| || || ||||||||||| Sbjct 227236 CTTGCCGGTCAACGTCTTCACGAAGATTTGCAT 227268 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || ||||| | || ||||| ||||| || ||||| Sbjct 226393 CTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCCTCGAGTTGCTTTCCAGCGAA 226452 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | || |||||| |||||| ||| | ||| Sbjct 226453 GATAAGACGCTGCTGGTCCGGTGGGATACCTTCTTTGTCCTGGATCTTGGCCTTCA-CGT 226511 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| ||||| |||| ||||| || || || |||| || | Sbjct 226512 TGTCAATGGTGTCCGAGCTC---TCCACTTCCAAAGTGATCGTCTTCCCTGTCAAAGTCT 226568 Query 46578 TAACAAAGATTTGCAT 46593 |||| || || ||||| Sbjct 226569 TAACGAAAATCTGCAT 226584 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | |||||| |||| || | || |||||| || || ||||| || | Sbjct 226812 TGCCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCAG 226871 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || |||| || | ||||| |||||||| ||||| | |||||||| | | Sbjct 226872 CCAAGGTACGGCCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCCGGTG 226931 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | | |||||||| ||| || |||| | | | |||||| |||| | Sbjct 226932 GGATACCTTCCTTGTCTTGGATTTTAGCTTTGACATTGTCGATCGTGTCTGAGCTC---T 226988 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || |||| |||||||||||||| |||| ||| || || ||||| ||||| Sbjct 226989 CAACTTCCAAGGTGATGGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 227040 >seq139 Length=20634497 Score = 104 bits (114), Expect = 3e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| ||| | || ||| || ||||||||||| |||| || ||||| | Sbjct 11242681 ACGCAACACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAATCGGCAAGCGTGCGACC 11242622 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| || |||||||| | | |||||||| | || | | ||| || Sbjct 11242621 ATCTTCAAGCTGCTTACCAGCGAATATAAGTCTTTGCTGGTCTGGAGGGATTCCCTCTTT 11242562 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 |||| |||||| || | | | | ||||| |||| || || |||| || Sbjct 11242561 GTCCTGGATCTTGGCTTTCACATTATCGATGGTGTCTGAGCTC---TCAACCTCCAAGGT 11242505 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || ||||| || || |||||||||||||| Sbjct 11242504 GATAGTTTTACCAGTCAGAGTCTTCACAAAGATTTGCAT 11242466 >seq80 Length=21647715 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || |||||||| | ||||| | |||| || |||||||| | || || Sbjct 2366753 CTCCTTTTGAATGTTGTAGTCAGCGAGAGTCCTTCCGTCTTCAAGCTGCTTCCTAGCAAA 2366694 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | |||||| || | || | | ||| |||||| ||||| | ||| | | | Sbjct 2366693 GATGAGCCTCTGCTGATCTGGTGGGATTCCCTCTTTGTCCTGAATCTT-TGCTTTAACAT 2366635 Query 46522 CGCCACCG-TGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | || | |||| |||| || || |||| ||||||||||| || || ||||| | Sbjct 2366634 TGTCAATGGTGTCTGAGCTC---TCAACTTCCAAAGTGATGGTTTTACCAGTGAGCGTCT 2366578 Query 46578 TAACAAAGATTTGCAT 46593 | |||||||| ||||| Sbjct 2366577 TCACAAAGATCTGCAT 2366562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237269523200