Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq92 104 2e-17 seq139 96.9 2e-15 seq72 89.7 4e-13 seq64 87.8 1e-12 seq101 82.4 5e-11 >seq92 Length=17487894 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||| || ||||| || | ||| ||| ||||| ||||| ||||| || Sbjct 10601488 CCACCTCTCAAACATAGAACCAAGTGGAGAGTTGATTCCTTTTGGATATTGTAATCACCC 10601547 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCA-----AAAATTAAACGCTGCTGATCCG 39607 ||| ||| |||| || || ||||| ||| || || |||| || || ||||| | Sbjct 10601548 AAAGTACGTCCATCTTCTAACTGTTTGCCGGCACGGCAAAGATTAGTCGTTGTTGATCTG 10601607 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 | || | ||||||||||| || ||| || | || | |||||||| | ||||| Sbjct 10601608 AAGGAATTCCTTCTTTGTCTTGAATCTTTGACTTGACGTTCTCAACTGTGTCGGAGCTTT 10601667 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || ||||| | || || || | || | ||| ||||||||||| ||||| Sbjct 10601668 CAACCTCCAAGGCTATGGTCTTGTCTGTGAGAGTCTTTACGAAGATTTGCAT 10601719 Score = 100 bits (110), Expect = 2e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||||||| ||||| || | ||| ||| ||||| ||||| || || | Sbjct 12099583 CCACCTCTCAAACGCAGGACCAAGTGGAGAGTTGATTCCTTTTGGATATTGTATTCATTC 12099524 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| || |||||||| ||| |||| || | | || || || || || Sbjct 12099523 AAAGTACGTCCATCTTCTAATTGTTTGCCGACAAAGATAAGTCTTTGTTGGTCTGAAGGA 12099464 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| ||||| || ||| || | || | | |||||| | | |||| || Sbjct 12099463 ATTCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTCTCAATTGTGTCGGAGGTTTCAACC 12099404 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGC 39717 ||||| || ||||| || | || | ||| ||||||||||| ||| Sbjct 12099403 TCCAAGGTTATTGTCTTGCTTGTGAGAGTCTTTACGAAGATTTGC 12099359 >seq139 Length=20634497 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGT-GCTTTCTTTTTGTATATTATAATCGGC 39551 || |||| ||||||||| ||||| || | ||| | ||||||| | || || ||||| || Sbjct 14478485 CCACCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTTCTTTT-GAATGTTGTAATCTGC 14478543 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| || |||| || | |||||| ||| |||| || | | ||||| || || | Sbjct 14478544 CAATGTACGACCATCTTCAAGTTGTTTGCCGGCAAAGATCAGTCTTTGCTGGTCTGAAGA 14478603 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| || ||| || | | | |||||||| | ||||| || Sbjct 14478604 AATGCCTTCTTTGTCCTGGATCTTTGCCTTGACGTTTTCCACTGTGTCGGAACTTTCGAC 14478663 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTG 39716 || || || || || || ||||| | ||| ||||||||||| || Sbjct 14478664 CTCTAAGGTTATGGTCTTGCCCGTGAGAGTCTTTACGAAGATTTG 14478708 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || || | ||| | ||| ||||| || || || ||||| ||| Sbjct 14477802 CCACCACGGAGACGGAGAACAAGATGAAGAGTTGACTCTTTCTGAATGTTGTAATCCGCC 14477861 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| |||| |||| || | ||||| ||| |||| |||| | ||| || |||| || Sbjct 14477862 AAAGCGCGACCATCCTCGAGCTGTTTTCCGGCAAAGATTAGTCTCTGTTGGTCCGGAGGG 14477921 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||||||||||| | | | || | |||| || || | | || || | ||| ||| Sbjct 14477922 ATCCCTTCTTTGTC-CTGAATCTTCGCCTTTACATTGT--CAATCGTATCCGAGCTCTCC 14477978 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | || || || |||||||| || || || || || |||||||| Sbjct 14477979 ACCTCAAGTGTTATGGTCTTACCCGTCAACGTCTTGACAAATATCTGCAT 14478028 >seq72 Length=2807273 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | ||| || || || || || || ||||| Sbjct 226358 CCACCACGGAGACGGAGGACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCT 226417 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | ||| || || | || || | ||||||||| |||| || Sbjct 226418 AAGGTGCGACCATCCTCGAGTTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCCGGTGGG 226477 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||||||||| || || || | ||| | | | ||||| | ||| ||||| Sbjct 226478 ATACCTTCTTTGTCCTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTCCGAGCTCTCCAC 226536 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || || || || || ||||| || ||||| |||||||| Sbjct 226537 TTCCAAAGTGATCGTCTTCCCTGTCAAAGTCTTAACGAAAATCTGCAT 226584 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | || || || || || ||||| || ||| Sbjct 226586 CCACCACGTAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGCC 226645 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | ||| || || |||| || | |||||||||||||| || Sbjct 226646 AAGGTGCGACCATCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGG 226705 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||| || || | | | || | | ||| | | | |||||||| ||| ||||| Sbjct 226706 ATACCTTCCTTATC-CTGAATCTTGGCCTTCACGTTGTCGATTGTGTCTGAGCTCTCCAC 226764 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||| |||||| || || || || | || || ||||| ||||||||| Sbjct 226765 CTCCAGAGTAATGGTCTTGCCGGTAAGTGTCTTGACGAAAATCTGCATG 226813 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||||| ||||| || | || || || || || || ||||| || Sbjct 226813 GCCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGC 226872 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| || | || |||||||| || ||| | || || || | ||||| |||| || Sbjct 226873 CAAGGTACGGCCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCCGGTGG 226932 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||||| ||||| ||||| ||| | | |||| | ||||||| ||| || Sbjct 226933 GATACCTTCCTTGTCTTGGATTTTAGCTTTGACATTGTCGATC--GTGTCTGAGCTCTCA 226990 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || || ||||| || || || || || |||||||||||||| Sbjct 226991 ACTTCCAAGGTGATGGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 227040 >seq64 Length=9524166 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563 ||| || ||||| || | ||| ||| || || ||||| ||||| |||||| || | Sbjct 3905755 ACGAAGAACCAAGTGAAGAGTCGATTCCTTCTGAATATTGTAATCAGCCAAAGTTCGACC 3905696 Query 39564 ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 ||| || | |||||||| || ||||| | | ||||| || || | ||||| || Sbjct 3905695 ATCCTCAAGCTGTTTCCCACCGAAAATGAGTCTTTGCTGGTCAAGTGGGATCCCTTCCTT 3905636 Query 39624 GTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683 ||| ||| || || | | | | ||||||| ||||||||| ||||||||||| Sbjct 3905635 GTCATGTATCTTAGCCTTCACGTTATCAATCGTGTCTGAGCTTTCCACTTCCAAAGTAAT 3905576 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || | || || | ||| |||||||| Sbjct 3905575 GGTTTTTCCGGTGAGGGTCTTGATGAAAATCTGCAT 3905540 >seq101 Length=14560423 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | || ||| || || || || || ||||| Sbjct 1861255 CCACCACGGAGACGCAACACCAAGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCGGCT 1861196 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | || || ||| | || || | |||||||||||||| || Sbjct 1861195 AAGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGATCCGGAGGG 1861136 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||| || || || || || | ||| | | | |||||||| ||| ||||| Sbjct 1861135 ATACCTTCCTTATCCTGGATCTTGGCCTTCA-CGTTGTCGATTGTGTCTGAGCTCTCCAC 1861077 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||||||||| || || || | || || |||||||| |||||| Sbjct 1861076 CTCAAGAGTAATTGTCTTGCCGGTAAGGGTCTTCACGAAGATTTGCATG 1861028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347368922629280