Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq66 132 6e-26 seq115 125 9e-24 seq47 107 2e-18 seq64 104 3e-17 >seq66 Length=12628956 Score = 132 bits (146), Expect = 6e-26 Identities = 302/447 (68%), Gaps = 8/447 (2%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | || | || ||||| |||||| | | ||| ||||| Sbjct 1472727 CGGTCAAACCGTCCTGGTCTGAGCAAAGCAGAGTCAAGAATATCAGCTCTATTGGTTGCA 1472668 Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 || | |||| || ||| |||| | || |||| ||||||||||| ||||| ||||| | Sbjct 1472667 GCAACTACAATAACACCGGTGTTACCTT--CAAATCCATCCATCTCAGTCAAGAGCTGAT 1472610 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 16062 | | ||| ||||| | |||||| || || | ||| | | | |||| | || | Sbjct 1472609 TGAGAGTCTGTTCTCTTTCATCGTTACCTCCACCAATACCGGTTCCTCTTTGCCTACCAA 1472550 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC-GACTTCAAAG 16121 | ||||| || ||||||| ||||| ||||| || ||||| || ||| ||| Sbjct 1472549 CAGCATCGATTTCATCAACAAAGACAATGCAGGGAGCGTTTTCTTTGGCTTTCTTGAAA- 1472491 Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181 ||||| || || | ||| || ||||| ||||||||||| ||||| | | | | | Sbjct 1472490 AGATCACGGACTCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCAG-A 1472432 Query 16182 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 || | || ||| || ||| || |||||| ||||| ||| || | |||||| ||||| Sbjct 1472431 GATGGAGAAGAAAGGCACACCAGCTTCACCAGCAATAGCTTTTGCCAAAAGAGTTTTACC 1472372 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTA 16300 ||||| || ||| | || ||||| || ||||| || ||| | | | | Sbjct 1472371 GGTACCAGGAGGACCGATTAACAGAACACCTTTCGGGATCTTAGCACCAACTGCGGTGAA 1472312 Query 16301 TCTCTCAGGTTGCTTAAGAAAATCCAC 16327 |||||| |||| ||| ||||| || || Sbjct 1472311 TCTCTCGGGTTTCTTCAGAAACTCAAC 1472285 >seq115 Length=22393718 Score = 125 bits (138), Expect = 9e-24 Identities = 202/283 (71%), Gaps = 12/283 (4%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||||||| || |||| |||||| |||||||| || || | || ||||| | | Sbjct 2971408 AAACCCATCCATTTCCGTCAGAAGCTGATTAATAGTCTGCTCTCTCTCGTCATTTCC--G 2971465 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| ||||| | | |||| | ||||| || ||||||||||| ||||| || ||| Sbjct 2971466 CCTCCCATGCCAGCTCCTCTTTGCCTACCCACAGCGTCAATCTCATCTATGAAAACAATG 2971525 Query 16092 CATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGC--CCAC 16147 || ||| ||||| || |||| ||| ||||||| || || || | ||| |||| Sbjct 2971526 CAAGGTGC--TTTCGATTTCGCCTTCTCAAACAGATCCC-TA-ACCCTAGACGCACCCAC 2971581 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||||||||||| |||||| || | | || | ||| || ||| || || | ||| Sbjct 2971582 ACCAACAAACAGCTCCACGAACTCCGACGCAGCACACGAGAAGAACGGCACTCCTGCTTC 2971641 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 16250 ||||| | |||| || | ||| ||||| |||||||| ||| Sbjct 2971642 TCCCGCCACCGCTCTCGCCAAAAGCGTCTTCCCCGTACCCGGC 2971684 >seq47 Length=18124089 Score = 107 bits (118), Expect = 2e-18 Identities = 299/451 (66%), Gaps = 16/451 (4%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| || ||||| | || | ||| || || || || | | || ||||| Sbjct 14822068 CGATCAAACCGCCCTGGTCTCAGCAAAGCGGAGTCGAGAATGTCTGCTCTGTTGGTTGCA 14822009 Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 || | || | || ||| |||| | || |||||||||||||||| || || ||||| | Sbjct 14822008 GCAACTACGATAACACCAGTGTTACCTT--CAAAACCATCCATCTCGGTTAAGAGCTGAT 14821951 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTC 16059 ||| ||| ||||| | ||| ||||| || |||| |||| | | ||| | | Sbjct 14821950 TAAGAGTCTGTTCTCTTTCGTCATTACCT---CCACCAATTCCAGTTCCTCTTTGTCTAC 14821894 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 16119 | || || || || ||||| | ||||| || || || ||| || || || | Sbjct 14821893 CAACAGCGTCTATTTCATCCACAAAGACAATACACGGAGCATTCTCTTTCGCCTTTTTGA 14821834 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 | || || || || | ||| || ||||||||||||||||| ||||| | | ||| Sbjct 14821833 AAAGGTCACGGACTCTTGAGGCACCAACACCAACAAACATCTCAACAAACTCAGAACCGG 14821774 Query 16180 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 16238 || || | | ||| || ||| | |||||| ||||||||| || | ||| || || Sbjct 14821773 AA-ATCGAAAAGAAAGGTACACCGGCTTCACCAGCAATGGCTTTAGCCAAAAGTGTTTTT 14821715 Query 16239 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAG 16298 || ||||| || ||| | || ||| ||||| |||||| || ||| || || Sbjct 14821714 CCAGTACCAGGAGGACCAACAAGAAGGACACCTTTCGGAATCCGAGCACCA--ACCGCAG 14821657 Query 16299 T--ATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | | |||||||| | ||| | ||| ||||| Sbjct 14821656 TAAACCTCTCAGGCTTCTTTAAAAACTCCAC 14821626 >seq64 Length=9524166 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 |||| || ||||| || | || || || || || || |||||||||||||| ||| | Sbjct 404080 CCTTCGCCGAGCGTATCGTGGCTTTCGCCTGCGTCGAAGGTATCTTCTTCTCCGGTAGTT 404139 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 ||||| | |||| ||||| |||||||| ||||||||||| || | ||||||||| | Sbjct 404140 TCTGCTCGATTTTCTGGCTTAAGAAGCGCGGTCTCATGCCCGGATTAACCTTCTCCAATG 404199 Query 102292 AGCTTATCTCTCGTGACGAGGG 102313 || | ||||| || ||||| || Sbjct 404200 AGTTGATCTCGCGAGACGAAGG 404221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741158515200