Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq77 105 8e-18 seq64 98.7 1e-15 seq47 93.3 5e-14 >seq77 Length=18658056 Score = 105 bits (116), Expect = 8e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 111001 GGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTG 111060 || ||||| | ||||||||| ||||| | ||||||| ||||| | ||| ||||| Sbjct 17990899 GGTGTTCCTGAATTGAAGAGAGTAGGAGACGCATGAGTGAACCATCTTTGAGACATTAAA 17990840 Query 111061 TTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATG 111120 | |||||| | || |||||| ||||||| ||||||||||| | |||| ||| Sbjct 17990839 TGGTATGTTTTGATTGCGGAATCAACATCTTCTTTGTGAATACCAACAGAGACTCTCATT 17990780 Query 111121 AACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCT 111180 | ||| | ||||||| |||| | | || || | ||| | ||||| || || Sbjct 17990779 AGCATGTGTTGAGGCCTTTCAACAACTTTGCCTTGAACTTTCAAGAGGTATGATTTTTCA 17990720 Query 111181 AGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221 || || |||| ||||||||| || | |||||||||||||| Sbjct 17990719 AGTGTTTTGAAACCAAAGTAATCATATTCGAAATCACGATC 17990679 >seq64 Length=9524166 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 119514 ccTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 ||||| || || ||||| | |||||| |||| | ||| |||||||| || | ||| Sbjct 404221 CCTTCGTCTCGCGAGATCAACTCATTGGAGAAGGTTAATCCGGGCATGAGACCGCGCTTC 404162 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| || || | || ||||| || || |||||||| || || || ||||||||| Sbjct 404161 TTAAGCCAGAAAATCGAGCAGAAACTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAA 404102 Query 119634 GCGAATAGACGCTCAGCAAAAGGTC-GAGACTTGTCGAACCACTTGAGAGCCCAGTTGGC 119692 || | | |||||| || |||||| |||| ||||| ||| | | ||||| | ||| Sbjct 404101 GCCACGATACGCTCGGC-GAAGGTCTGAGATCCGTCGATCCATGTCATCGCCCACTGGGC 404043 Query 119693 CTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 || | | | ||| |||| || | |||||| Sbjct 404042 TTTCTTCGCGACGCAAGGGATGGTCTCGATGGC 404010 >seq47 Length=18124089 Score = 93.3 bits (102), Expect = 5e-14 Identities = 295/452 (65%), Gaps = 18/452 (4%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 ||||| || || ||||| | || | ||| || ||||| || | | ||| || || Sbjct 14822068 CGATCAAACCGCCCTGGTCTCAGCAAAGCGGAGTCGAGAATGTCTGCTCTGTTGGTTGCA 14822009 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | || ||||| | | || ||||| ||||| || || | ||||| || Sbjct 14822008 GCAACTACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCGGTTAAGAGCTGATTA 14821949 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCCGAACGCTTCTT----- 11675 | |||||||| | || || || | | ||||| | || | | |||| Sbjct 14821948 AGAGTCTGTTCTCTTTCGTCATTA-----CCT-CCACCAATTCC-AGTTCCTCTTTGTCT 14821896 Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTC 11735 ||| |||||||| || ||||| | || || |||||||| || | |||| || Sbjct 14821895 ACCAACAGCGTCTATTTCATCCACAAAGACAATACACGGAGCATTCTCTTTCGCCTTTTT 14821836 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 |||||| ||||| || | || |||||||| || ||||||||||| || | | | Sbjct 14821835 GAAAAGGTCACGGACTCTTGAGGCACCAACACCAACAAACATCTCAACAAACTCAGAACC 14821776 Query 11796 AGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 ||| | || ||| || ||| | |||||||| |||||| ||| | || || || Sbjct 14821775 GGAAATCGAAAAGAAAGGTACACCGGCTTCACCAGCAATGGCTTTAGCCAAAAGTGTTTT 14821716 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAA 11915 || |||||||| | |||| | |||||| | || || ||| |||||| || | Sbjct 14821715 TCCAGTACCAGGAGGACCAACAAGAAGGACACCTTTCGGAATCCGAGCACCA--ACCGCA 14821658 Query 11916 GT--AGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945 || | | |||||||||||| | || ||||| Sbjct 14821657 GTAAACCTCTCAGGCTTCTTTAAAAACTCCAC 14821626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974822048000