Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq66 136 5e-27 seq115 122 1e-22 seq47 118 1e-21 seq64 111 2e-19 >seq66 Length=12628956 Score = 136 bits (150), Expect = 5e-27 Identities = 298/444 (67%), Gaps = 2/444 (0%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | || | || ||||| |||||| | | ||| || || Sbjct 1472727 CGGTCAAACCGTCCTGGTCTGAGCAAAGCAGAGTCAAGAATATCAGCTCTATTGGTTGCA 1472668 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | |||| || ||| || | | ||||| ||||||||||| ||||| || || || Sbjct 1472667 GCAACTACAATAACACCGGTGTTACCTTCAAATCCATCCATCTCAGTCAAGAGCTGATTG 1472608 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9371 | ||| ||||| | |||||| || || | ||| | | | |||| | || || Sbjct 1472607 AGAGTCTGTTCTCTTTCATCGTTACCTCCACCAATACCGGTTCCTCTTTGCCTACCAACA 1472548 Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 ||||| || ||||||| |||||||| || || ||||| ||| | | || ||| Sbjct 1472547 GCATCGATTTCATCAACAAAGACAATGCAGGGAGCGTTTTCTTTGGCTTTCTTGAAAAGA 1472488 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 || || || ||| ||| || ||||| ||||||||||| ||||| | | | | | || Sbjct 1472487 TCACGGACTCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCAG-AGAT 1472429 Query 9492 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 | || ||| || ||| || |||||| ||||| ||| || | |||||| ||||| || Sbjct 1472428 GGAGAAGAAAGGCACACCAGCTTCACCAGCAATAGCTTTTGCCAAAAGAGTTTTACCGGT 1472369 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTATCT 9610 ||| || ||| | || |||| || ||||| || ||| | | | |||| Sbjct 1472368 ACCAGGAGGACCGATTAACAGAACACCTTTCGGGATCTTAGCACCAACTGCGGTGAATCT 1472309 Query 9611 CTCAGGTTGCTTGAGAAAATCCAC 9634 ||| |||| ||| ||||| || || Sbjct 1472308 CTCGGGTTTCTTCAGAAACTCAAC 1472285 >seq115 Length=22393718 Score = 122 bits (134), Expect = 1e-22 Identities = 198/281 (70%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||||||| || |||| ||| || |||||||| || || | || ||||| | | Sbjct 2971408 AAACCCATCCATTTCCGTCAGAAGCTGATTAATAGTCTGCTCTCTCTCGTCATTTCC--G 2971465 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| ||||| | | |||| | ||||| || ||||||||||| ||||| ||||| Sbjct 2971466 CCTCCCATGCCAGCTCCTCTTTGCCTACCCACAGCGTCAATCTCATCTATGAAAACAATG 2971525 Query 9399 CATGGTTGATTTTCGCGGGCGATTTC--AAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 || ||| ||||| || ||| ||| ||||| | |||||| || ||||||| Sbjct 2971526 CAAGGTGC--TTTCGATTTCGCCTTCTCAAACAGATCCCTAACCCTAGACGCACCCACAC 2971583 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516 ||||||||| |||||| || | | || | ||| || ||| || || | ||| | Sbjct 2971584 CAACAAACAGCTCCACGAACTCCGACGCAGCACACGAGAAGAACGGCACTCCTGCTTCTC 2971643 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9557 |||| | |||| || | ||| ||||| |||||||| ||| Sbjct 2971644 CCGCCACCGCTCTCGCCAAAAGCGTCTTCCCCGTACCCGGC 2971684 >seq47 Length=18124089 Score = 118 bits (130), Expect = 1e-21 Identities = 299/449 (67%), Gaps = 12/449 (3%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 |||||||| || ||||| | || | ||| || || || || | | || || || Sbjct 14822068 CGATCAAACCGCCCTGGTCTCAGCAAAGCGGAGTCGAGAATGTCTGCTCTGTTGGTTGCA 14822009 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | || ||| || | | ||||||||||||||||| || || || || ||| Sbjct 14822008 GCAACTACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCGGTTAAGAGCTGATTA 14821949 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 | ||| ||||| | ||| ||||| || |||| |||| | | ||| | || Sbjct 14821948 AGAGTCTGTTCTCTTTCGTCATTACCT---CCACCAATTCCAGTTCCTCTTTGTCTACCA 14821892 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || || || || ||||| | ||||||||||| || ||| || || ||| || Sbjct 14821891 ACAGCGTCTATTTCATCCACAAAGACAATACACGGAGCATTCTCTTTCGCCTTTTTGAAA 14821832 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 || || || || ||| ||| || ||||||||||||||||| ||||| | | ||||| Sbjct 14821831 AGGTCACGGACTCTTGAGGCACCAACACCAACAAACATCTCAACAAACTCAGAACCGGAA 14821772 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | | ||| || ||| | |||||| ||||||||| || | ||| || || || Sbjct 14821771 -ATCGAAAAGAAAGGTACACCGGCTTCACCAGCAATGGCTTTAGCCAAAAGTGTTTTTCC 14821713 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGT- 9606 ||||| || ||| | || ||| |||| |||||| || ||| || ||| Sbjct 14821712 AGTACCAGGAGGACCAACAAGAAGGACACCTTTCGGAATCCGAGCACCA--ACCGCAGTA 14821655 Query 9607 -ATCTCTCAGGTTGCTTGAGAAAATCCAC 9634 | |||||||| | ||| | ||| ||||| Sbjct 14821654 AACCTCTCAGGCTTCTTTAAAAACTCCAC 14821626 >seq64 Length=9524166 Score = 111 bits (122), Expect = 2e-19 Identities = 154/215 (72%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 || || ||||| || || | ||||| |||||| || || ||||||||||| |||||| Sbjct 404221 CCTTCGTCTCGCGAGATCAACTCATTGGAGAAGGTTAATCCGGGCATGAGACCGCGCTTC 404162 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| |||| | |||||| ||||||||||||||||| || || || || || Sbjct 404161 TTAAGCCAGAAAATCGAGCAGAAACTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAA 404102 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTC 117471 || | | ||||||||||||| |||| | ||| | |||| |||| ||||| | Sbjct 404101 GCCACGATACGCTCGGCGAAGGTCTGAGA---TCCGTCGATCCATGTCATCGCCCACTGG 404045 Query 117472 GCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 || |||||| | | || || | || | |||||| Sbjct 404044 GCTTTCTTCGCGACGCAAGGGATGGTCTCGATGGC 404010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979620038400