Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq153 567 8e-157 seq80 435 3e-117 seq90 93.3 5e-14 >seq153 Length=83015 Score = 567 bits (628), Expect = 8e-157 Identities = 725/999 (73%), Gaps = 0/999 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| |||||| | ||| | ||||| |||| ||||| ||||| || Sbjct 52472 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 52413 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCA 168610 |||||||| ||||| || ||| | | ||| ||| | ||||| |||||||| || Sbjct 52412 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 52353 Query 168611 CCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAAC 168670 || || ||||| || || || | |||||||| | || |||| | || |||||||| Sbjct 52352 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 52293 Query 168671 ATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATT 168730 || || || ||||| || |||| |||| ||| || ||| | ||||| ||||| || Sbjct 52292 ATTATTTCTGGTGCCATTATTCCTACTTCTGCCGCTATTGGTTTGCACTTTTACCCGATC 52233 Query 168731 TGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATC 168790 |||||||| || | | ||||| ||| |||| || ||||||||||| | | | | Sbjct 52232 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 52173 Query 168791 TTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGA 168850 | ||||| || | || | || || |||||| | |||||||| | | | | Sbjct 52172 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 52113 Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 168910 || |||||| | |||||||| |||||| |||||||| || || | || || ||| Sbjct 52112 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 52053 Query 168911 GTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT 168970 || ||| | | |||||| ||||||| || ||| ||||||||||||||||||||||| Sbjct 52052 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 51993 Query 168971 TCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCC 169030 ||||| || |||||||| ||| | |||||||| || |||||||||||||||||||| || Sbjct 51992 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 51933 Query 169031 TTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGT 169090 || || ||| ||| ||||| ||| | ||||| || || ||||| || ||||||||| Sbjct 51932 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGT 51873 Query 169091 TCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGT 169150 || | ||||| ||| | | ||||| || || || || | |||||| || | ||| Sbjct 51872 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 51813 Query 169151 TACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGT 169210 |||| |||||||||||||||||||| || || ||||| || || || || || || || Sbjct 51812 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 51753 Query 169211 AGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 169270 |||| |||||||| ||||| |||||||||||||| | | | || |||||| |||| Sbjct 51752 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGCG 51693 Query 169271 GTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 169330 | | || || ||| || | ||||| || || | ||||| | || ||||| |||||| Sbjct 51692 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 51633 Query 169331 TTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACA 169390 | || || || || || ||||||||||| || ||| | | || | ||| ||| Sbjct 51632 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 51573 Query 169391 TGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCT 169450 |||| ||| | ||||| | || ||||||||||||||||| |||||||| ||||| ||| Sbjct 51572 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 51513 Query 169451 CACAACTTCCCACTAGACTTAGCATCTGCTGAGACTACA 169489 ||||||||||| |||||| |||| ||| |||| || || Sbjct 51512 CACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 51474 >seq80 Length=21647715 Score = 435 bits (482), Expect = 3e-117 Identities = 674/956 (71%), Gaps = 6/956 (1%) Strand=Plus/Plus Query 168512 ACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTAACA 168571 ||| | ||| | ||||| |||| ||||| ||||| ||| ||||||| ||||| | Sbjct 17113468 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTAGTGATCCCTACCTTATTGAAC 17113527 Query 168572 GCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATC 168631 ||| | | ||| ||| | ||||| |||| || || | || ||||| || || || Sbjct 17113528 GCAACTTCCGTTTTTATTATCGCATTCATTGTTGTTCCTCTAGTAGATATTGATGGTATT 17113587 Query 168632 AGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTT 168691 | |||||||| | | |||| | || |||||||| || || || |||| || || Sbjct 17113588 TGTGAACCTGTTTCTAGATCTCTTCTTTACGGAAACAATATTATTTCTGGTGTCATTATT 17113647 Query 168692 CCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGAT 168751 || ||| ||| || ||| | ||||| ||||| || | |||||| || | | ||| Sbjct 17113648 CCTACTTATGTCGCTATTGGTTTGCACTTTTACCCGATCTAGGAAGCTGCATCCGTTGAT 17113707 Query 168752 GAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATC 168811 || ||| |||| || ||| ||| ||| | | | | | ||||| || | || | Sbjct 17113708 GAATGGCTATACAACGGTTGTCTTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTA 17113767 Query 168812 TCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATC 168871 || || |||||| | |||||||| | | | | || ||| || | |||||||| Sbjct 17113768 GCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCTGTCTGGGTGTGCGTCCTTGGATT 17113827 Query 168872 TGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTA-TACCCATT 168930 | |||||| |||||||| ||||| | || || ||| || ||| ||| | |||||| | Sbjct 17113828 TTTGTTGCATATTCAGCTCCAGTTGCAGCTGCTACTGCTGTTTTC-TTGAACTACCCAAT 17113886 Query 168931 TGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCAT 168990 | |||| || ||| | |||||||||||||||| |||| ||||| || |||||||| || Sbjct 17113887 TTGTCAAGGAAGTTTTTATGATGGTATGCCTCTATGAATCTCTGGTACTTTCAACTTTAT 17113946 Query 168991 GTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGC 169050 | | |||||| | || |||||||||||||||||||| || || || ||| ||| ||||| Sbjct 17113947 GATTGTATTCTAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGC 17114006 Query 169051 AGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCT 169110 ||| | ||||| || || ||||| || ||||||||||| | ||||| ||| | | Sbjct 17114007 TGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTT 17114066 Query 169111 AATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGA 169170 ||||| || || || || | |||||| || | ||||||| |||||||||||||| Sbjct 17114067 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGA 17114126 Query 169171 AGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGC 169230 | |||| || || ||||| | || || | || || || |||| |||||||| ||||| Sbjct 17114127 AAAAACTTACAACATTGTAGTTGCTCACGACTATTTTGGCCGATTGATCTTCCAATATGC 17114186 Query 169231 AAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGT 169290 |||||||||||||| | | | || |||||| |||||| | || || ||| | | Sbjct 17114187 TAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGCAGCTTGGCCGGTAGTAGCTAT 17114246 Query 169291 ATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAA 169350 ||||| || || | ||||| | || ||||| |||||| | || || || | || || Sbjct 17114247 TTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAA 17114306 Query 169351 CCAATCAGTTGTAGAT-GTTAACGGTAAG-ATCATTCCTACATGGGGTGACGTACTTAAC 169408 || |||| | || ||| || || | | | | ||| ||| |||| ||| | ||||| Sbjct 17114307 CCCATCAATAGTTGATAGTCAA--GAACGTGTTATTAATACTTGGGCTGATATTATTAAC 17114364 Query 169409 AGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACT 169464 | || || |||| ||||||||| |||||||| ||||| |||||||||||||| || Sbjct 17114365 CGTGCTAATCTTGTTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCT 17114420 >seq90 Length=4948294 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 169256 CACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGT 169315 || |||||| |||| | | || || || | | ||||| || || | ||||| | Sbjct 3476982 CATTTCTTCTTAGCGGCTTGGCCGGTAATACATATTTGGTTTACTGCTTTAGGTATTAGC 3477041 Query 169316 ACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGAT-GTTAACGG 169374 || | || ||||| | || || ||||| || ||||||||||| || ||| || || | Sbjct 3477042 ACTGTAGCTTTCAATCTAAATGGTTTTAATTTCAACCAATCAGTAGTTGATAGTCAATGA 3477101 Query 169375 TAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAAT 169434 | | ||| ||| |||| ||| | |||| | || ||||||||||||||||| || Sbjct 3477102 CGTGTT-ATTAATACTTGGGTTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTAT 3477160 Query 169435 GCATGAGCGTAACGCTCACAACTTCCCACTAGA 169467 |||| | |||| ||||| |||||||| ||||| Sbjct 3477161 GCATTAAGGTAATGCTCAAAACTTCCCTCTAGA 3477193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564440471116800