Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq153 544 9e-150 seq80 423 2e-113 seq90 87.8 2e-12 >seq153 Length=83015 Score = 544 bits (602), Expect = 9e-150 Identities = 711/984 (72%), Gaps = 0/984 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || |||| ||||| ||||| ||||||||||| Sbjct 52463 TGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 52404 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | || ||||| | || ||||| || ||||| || || || Sbjct 52403 ACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGAT 52344 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | || || ||||| || || ||| Sbjct 52343 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCT 52284 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| ||| || ||| | ||||| || || || |||||||| Sbjct 52283 GGTGCCATTATTCCTACTTCTGCCGCTATTGGTTTGCACTTTTACCCGATCTGGGAAGCT 52224 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| | | ||||| ||| | || ||||||||||||||| || || || | | ||||| Sbjct 52223 GCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTT 52164 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || || |||||| | |||||||||| | |||| | |||||| Sbjct 52163 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 52104 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 ||||||||||| ||| |||||||| ||||| || |||| || ||||| ||||| Sbjct 52103 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTG 52044 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | || || | ||||| ||| ||| || || || ||||||||||| ||||| ||||| Sbjct 52043 ATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACT 51984 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||| ||| | |||||||| || |||||||||||||||||||||||||| || ||| Sbjct 51983 TTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATG 51924 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | ||||| || | || || || ||||| ||||| | ||| Sbjct 51923 TTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTA 51864 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || ||||| || || || || | || |||| |||| Sbjct 51863 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTC 51804 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || |||||||||||||| ||||||||||| || || || || || ||||| || | ||| Sbjct 51803 GGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATC 51744 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 |||||||||||||| || ||||| ||| | | || |||||| | || | | || Sbjct 51743 TTCCAATATGCTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCG 51684 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 |||||| | || ||||| ||| | | |||||| |||| ||||| || ||||| ||||| Sbjct 51683 GTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGT 51624 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 || || |||||||| ||| | || ||| | || || || ||| ||||| || Sbjct 51623 TTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGAT 51564 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658 || ||||| | || ||||| ||||||||||| |||||||| |||||||| ||||||||| Sbjct 51563 ATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTC 51504 Query 170659 CCACTTGACTTGGCAACTGCTGAG 170682 || || ||| | || ||| |||| Sbjct 51503 CCTCTAGACCTAGCTGCTGTTGAG 51480 >seq80 Length=21647715 Score = 423 bits (468), Expect = 2e-113 Identities = 667/953 (70%), Gaps = 2/953 (0%) Strand=Plus/Plus Query 169717 AACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCA 169776 ||||| | || |||| ||||| ||||| || ||||||| |||| ||| | Sbjct 17113474 AACCGTCTTTACATTGGATGGTTTGGTGTTTTAGTGATCCCTACCTTATTGAACGCAACT 17113533 Query 169777 ACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAA 169836 || ||||| | || ||||| | | ||| | || || || ||||| || | ||| Sbjct 17113534 TCCGTTTTTATTATCGCATTCATTGTTGTTCCTCTAGTAGATATTGATGGTATTTGTGAA 17113593 Query 169837 CCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCT 169896 ||||| | | || | | || || ||||| || || ||||||| || |||| || Sbjct 17113594 CCTGTTTCTAGATCTCTTCTTTACGGAAACAATATTATTTCTGGTGTCATTATTCCTACT 17113653 Query 169897 TCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGG 169956 | ||| || ||| | ||||| || || || | |||||| ||| | | ||||| ||| Sbjct 17113654 TATGTCGCTATTGGTTTGCACTTTTACCCGATCTAGGAAGCTGCATCCGTTGATGAATGG 17113713 Query 169957 TTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCC 170016 | || |||||| ||| |||| || || || | | ||||| | | || | || Sbjct 17113714 CTATACAACGGTTGTCTTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 17113773 Query 170017 TACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTA 170076 || |||||| | |||||||||| | | || | ||| ||||||||||||| | ||| Sbjct 17113774 TATATGGGTCGTGAGTGGGAACTTAGTTTCTGTCTGGGTGTGCGTCCTTGGATTTTTGTT 17113833 Query 170077 GCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAG 170136 |||||||| |||||||| |||| || ||||| ||||| || || | |||| Sbjct 17113834 GCATATTCAGCTCCAGTTGCAGCTGCTACTGCTGTTTTCTTGAACTACCCAATTTGTCAA 17113893 Query 170137 GGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTA 170196 ||| ||| | || || ||||||||| | ||||| ||||| || ||||| ||| | ||| Sbjct 17113894 GGAAGTTTTTATGATGGTATGCCTCTATGAATCTCTGGTACTTTCAACTTTATGATTGTA 17113953 Query 170197 TTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATG 170256 ||| | || |||||||||||||||||||||||||| || ||| ||| || |||||| | Sbjct 17113954 TTCTAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 17114013 Query 170257 TTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGA 170316 ||||| || | || || || ||||| ||||| | ||||| ||| | | ||||| Sbjct 17114014 TTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGG 17114073 Query 170317 GAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACA 170376 || || ||||| || || || || | || |||| |||||| ||||||||| |||| Sbjct 17114074 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAAAAACT 17114133 Query 170377 TACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTT 170436 ||||||||||| | || || | || ||||| || | ||||||||||||||||| || Sbjct 17114134 TACAACATTGTAGTTGCTCACGACTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTC 17114193 Query 170437 AACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTA 170496 ||||| ||| | | || |||||| | || | | || |||||| || ||||| Sbjct 17114194 AACAACTCCCGTTCTTTACATTTCTTCTTAGCAGCTTGGCCGGTAGTAGCTATTTGGTTT 17114253 Query 170497 ACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCA 170556 ||| | | |||||| |||| ||||| || ||||| ||||| || | ||||||| ||| Sbjct 17114254 ACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAACCCATCA 17114313 Query 170557 ATCGTAGATGGATCTGGTA-AAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAA 170615 || || ||| | || | | || || ||| ||||| || || ||||| | || || Sbjct 17114314 ATAGTTGATAG-TCAAGAACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 17114372 Query 170616 CCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGACT 170668 || | ||||||||| |||||||| |||||||| ||||||||||| ||| ||| Sbjct 17114373 TCTTGTTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTTTACT 17114425 >seq90 Length=4948294 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 170455 CACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGC 170514 || |||||| | || | | || ||| || || ||||| ||| | | |||||| || Sbjct 3476982 CATTTCTTCTTAGCGGCTTGGCCGGTAATACATATTTGGTTTACTGCTTTAGGTATTAGC 3477041 Query 170515 ACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGG---ATCT 170571 || | || || || || ||||| ||||| |||||||| ||| | || ||| | || Sbjct 3477042 ACTGTAGCTTTCAATCTAAATGGTTTTAATTTCAACCAATCAGTAGTTGATAGTCAATGA 3477101 Query 170572 GGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTA 170631 || || || ||| |||| || || |||| | || ||||| ||||||||||| Sbjct 3477102 CGT---GTTATTAATACTTGGGTTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTT 3477158 Query 170632 ATGCATGAGCGTAATGCACACAACTTCCCACTTGA 170666 |||||| | ||||||| || |||||||| || || Sbjct 3477159 ATGCATTAAGGTAATGCTCAAAACTTCCCTCTAGA 3477193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582846834304000