Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq153 648 0.0 seq80 542 3e-149 seq90 131 2e-25 >seq153 Length=83015 Score = 648 bits (718), Expect = 0.0 Identities = 727/972 (75%), Gaps = 0/972 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 51502 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATA 51561 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | |||||| ||| ||||| || | || ||||| || Sbjct 51562 ATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGATTGGTTGAAATTG 51621 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| ||||||| ||| | ||||| ||||||||| || || Sbjct 51622 AAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAACCAAATACCTACT 51681 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || |||||||| || ||||| || || | |||||| |||||||| |||||| ||| Sbjct 51682 ACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGGGAGTTGTTGAAACTAGCATATTGG 51741 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || ||||||||||| ||||| || |||||||| ||||||||| Sbjct 51742 AAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGA 51801 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | || || |||||||||| ||||| | ||| | | |||| Sbjct 51802 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 51861 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| ||||| | || |||||||||||||| || || Sbjct 51862 GTTACCAAGGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACACCT 51921 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||| ||||| || || |||||||| |||| ||| ||||| Sbjct 51922 AACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTG 51981 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| |||||||| ||| ||||| || | || || Sbjct 51982 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAG 52041 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| ||| Sbjct 52042 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 52101 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||| ||||||||||| ||| | | |||||| Sbjct 52102 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGT 52161 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | ||||| | |||| |||| |||||| ||||| || ||||||||||| || | | Sbjct 52162 AAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGAT 52221 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || |||||||| || || || || || | ||||||||| ||| | |||| | |||| Sbjct 52222 GCAGCTTCCCAGATCGGGTAAAAGTGCAAACCAATAGCGGCAGAAGTAGGAATAATGGCA 52281 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 |||||||| || ||||||||||| | ||||| |||| || || ||||| ||||| ||| Sbjct 52282 CCAGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCA 52341 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAAACAGACAGTGGCAGCAAGTAGA 84884 ||||| ||||| || ||| ||| |||||| || || ||| | ||| || | | || Sbjct 52342 ATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAG 52401 Query 84885 GTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACC 84944 || || ||||| | | |||||||| |||| || | |||||| | |||| ||| | | Sbjct 52402 GTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATC 52461 Query 84945 CAATCACAGAAG 84956 || | ||||||| Sbjct 52462 CAGTTACAGAAG 52473 >seq80 Length=21647715 Score = 542 bits (600), Expect = 3e-149 Identities = 690/950 (73%), Gaps = 0/950 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||| ||||| ||||||||| |||| ||||| |||| Sbjct 17114417 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATAACAAGATTAGCACGGTTAATA 17114358 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | |||||| | ||| ||||| || | | ||||| | Sbjct 17114357 ATATCAGCCCAAGTATTAATAACACGTTCTTGACTATCAACTATTGATGGGTTGAAACTG 17114298 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| ||||||| ||| | ||||| ||||||||| | || Sbjct 17114297 AAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAACCAAATAGCTACT 17114238 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || |||||||| || ||||| || || | |||||| |||||||| |||||| ||| Sbjct 17114237 ACCGGCCAAGCTGCTAAGAAGAAATGTAAAGAACGGGAGTTGTTGAAACTAGCATATTGG 17114178 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || ||| |||||||| | ||||| || ||||||| ||||||||| Sbjct 17114177 AAGATCAATCGGCCAAAATAGTCGTGAGCAACTACAATGTTGTAAGTTTTTTCTTCTTGA 17114118 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | || || |||||||||| ||||| | ||| | | |||| Sbjct 17114117 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 17114058 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| ||||| | || |||||||||||||| || || Sbjct 17114057 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACACCT 17113998 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||| ||||| || || |||| ||| |||| ||| ||||| Sbjct 17113997 AACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTAGAATACAATCATAAAGTTG 17113938 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| | || ||||| |||||| | ||| ||||| | | || || Sbjct 17113937 AAAGTACCAGAGATTCATAGAGGCATACCATCATAAAAACTTCCTTGACAAATTGGGTAG 17113878 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | ||| ||||||| || |||||||||||||| || || |||||| | ||||| ||| Sbjct 17113877 TTCAAGAAAACAGCAGTAGCAGCTGCAACTGGAGCTGAATATGCAACAAAAATCCAAGGA 17113818 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||| ||| |||| | ||||||||| ||||||||||| ||| | | |||||| Sbjct 17113817 CGCACACCCAGACAGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGT 17113758 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | ||||| | |||| |||| |||| | | ||| || ||||||||||| || | | Sbjct 17113757 AAAAAGTGTAGAACAATTAGTTCATAAAGACAACCGTTGTATAGCCATTCATCAACGGAT 17113698 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || |||||| | || || || || || | ||||||||| | | | |||| | | || Sbjct 17113697 GCAGCTTCCTAGATCGGGTAAAAGTGCAAACCAATAGCGACATAAGTAGGAATAATGACA 17113638 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 |||||||| || ||||||||||| | ||||| | || || || |||| ||||| ||| Sbjct 17113637 CCAGAAATAATATTGTTTCCGTAAAGAAGAGATCTAGAAACAGGTTCACAAATACCATCA 17113578 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAAACAGACAGTGGCAGCAAGTAGA 84884 ||||| ||| | || || ||| |||||| || || ||| | ||| || | || Sbjct 17113577 ATATCTACTAGAGGAACAACAATGAATGCGATAATAAAAACGGAAGTTGCGTTCAATAAG 17113518 Query 84885 GTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGT 84934 || || |||| | | |||||||| |||| || | |||||| | ||| Sbjct 17113517 GTAGGGATCACTAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGT 17113468 >seq90 Length=4948294 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||| || ||||| |||||||||||||| |||||||||| Sbjct 3477187 GGGAAGTTTTGAGCATTACCTTAATGCATAACTTCCATACCAAGGTTAGCACGATTAATA 3477128 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| |||| ||||| | |||||| ||| ||||| || | || ||||| ||| Sbjct 3477127 ATATCAACCCAAGTATTAATAACACGTCATTGACTATCAACTACTGATTGGTTGAAATTA 3477068 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| ||||| || || | ||||||| ||| | ||||| ||||||||| | Sbjct 3477067 AAACCATTTAGATTGAAAGCTACAGTGCTAATACCTAAAGCAGTAAACCAAATATGTATT 3477008 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACG 84199 || |||||||| || ||||| || || | | |||| Sbjct 3477007 ACCGGCCAAGCCGCTAAGAAGAAATGTAAAAAACG 3476973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571272457452800