Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31]
160 sequences; 229,211,023 total letters
Query= NC_015569.1
Length=178563
Score E
Sequences producing significant alignments: (Bits) Value
seq153 648 0.0
seq80 542 3e-149
seq90 131 2e-25
>seq153
Length=83015
Score = 648 bits (718), Expect = 0.0
Identities = 727/972 (75%), Gaps = 0/972 (0%)
Strand=Plus/Plus
Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044
|||||||| || || |||||||| ||||| |||||||||||||| ||||| ||||
Sbjct 51502 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATA 51561
Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104
| ||| ||||| ||||| | |||||| ||| ||||| || | || ||||| ||
Sbjct 51562 ATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGATTGGTTGAAATTG 51621
Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164
|| ||||| || || || ||||| ||||||| ||| | ||||| ||||||||| || ||
Sbjct 51622 AAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAACCAAATACCTACT 51681
Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224
|| |||||||| || ||||| || || | |||||| |||||||| |||||| |||
Sbjct 51682 ACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGGGAGTTGTTGAAACTAGCATATTGG 51741
Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284
||||| | || || || || ||||||||||| ||||| || |||||||| |||||||||
Sbjct 51742 AAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGA 51801
Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344
||||| ||||||| | || || |||||||||| ||||| | ||| | | ||||
Sbjct 51802 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 51861
Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404
|| || | ||||||||||| ||| ||||| | || |||||||||||||| || ||
Sbjct 51862 GTTACCAAGGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACACCT 51921
Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464
||||||||||| || |||||||| ||||| || || |||||||| |||| ||| |||||
Sbjct 51922 AACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTG 51981
Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524
|| || || ||||| || || ||||| |||||||| ||| ||||| || | || ||
Sbjct 51982 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAG 52041
Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584
| | ||| ||||||| || |||||||| ||||| || || |||||| ||||| |||
Sbjct 52042 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 52101
Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644
|||||||| ||||| | ||||||||| ||||||||||| ||| | | ||||||
Sbjct 52102 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGT 52161
Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704
| ||||| | |||| |||| |||||| ||||| || ||||||||||| || | |
Sbjct 52162 AAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGAT 52221
Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764
|| |||||||| || || || || || | ||||||||| ||| | |||| | ||||
Sbjct 52222 GCAGCTTCCCAGATCGGGTAAAAGTGCAAACCAATAGCGGCAGAAGTAGGAATAATGGCA 52281
Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824
|||||||| || ||||||||||| | ||||| |||| || || ||||| ||||| |||
Sbjct 52282 CCAGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCA 52341
Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAAACAGACAGTGGCAGCAAGTAGA 84884
||||| ||||| || ||| ||| |||||| || || ||| | ||| || | | ||
Sbjct 52342 ATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAG 52401
Query 84885 GTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACC 84944
|| || ||||| | | |||||||| |||| || | |||||| | |||| ||| | |
Sbjct 52402 GTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTATC 52461
Query 84945 CAATCACAGAAG 84956
|| | |||||||
Sbjct 52462 CAGTTACAGAAG 52473
>seq80
Length=21647715
Score = 542 bits (600), Expect = 3e-149
Identities = 690/950 (73%), Gaps = 0/950 (0%)
Strand=Plus/Minus
Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044
|||||||| || || |||||||| ||||| ||||||||| |||| ||||| ||||
Sbjct 17114417 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATAACAAGATTAGCACGGTTAATA 17114358
Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104
| ||| ||||| ||||| | |||||| | ||| ||||| || | | ||||| |
Sbjct 17114357 ATATCAGCCCAAGTATTAATAACACGTTCTTGACTATCAACTATTGATGGGTTGAAACTG 17114298
Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164
|| ||||| || || || ||||| ||||||| ||| | ||||| ||||||||| | ||
Sbjct 17114297 AAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAACCAAATAGCTACT 17114238
Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224
|| |||||||| || ||||| || || | |||||| |||||||| |||||| |||
Sbjct 17114237 ACCGGCCAAGCTGCTAAGAAGAAATGTAAAGAACGGGAGTTGTTGAAACTAGCATATTGG 17114178
Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284
||||| | || || || ||| |||||||| | ||||| || ||||||| |||||||||
Sbjct 17114177 AAGATCAATCGGCCAAAATAGTCGTGAGCAACTACAATGTTGTAAGTTTTTTCTTCTTGA 17114118
Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344
||||| ||||||| | || || |||||||||| ||||| | ||| | | ||||
Sbjct 17114117 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 17114058
Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404
|| || | ||||||||||| ||| ||||| | || |||||||||||||| || ||
Sbjct 17114057 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACACCT 17113998
Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464
||||||||||| || |||||||| ||||| || || |||| ||| |||| ||| |||||
Sbjct 17113997 AACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTAGAATACAATCATAAAGTTG 17113938
Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524
|| || || ||||| | || ||||| |||||| | ||| ||||| | | || ||
Sbjct 17113937 AAAGTACCAGAGATTCATAGAGGCATACCATCATAAAAACTTCCTTGACAAATTGGGTAG 17113878
Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584
| ||| ||||||| || |||||||||||||| || || |||||| | ||||| |||
Sbjct 17113877 TTCAAGAAAACAGCAGTAGCAGCTGCAACTGGAGCTGAATATGCAACAAAAATCCAAGGA 17113818
Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644
|||| ||| |||| | ||||||||| ||||||||||| ||| | | ||||||
Sbjct 17113817 CGCACACCCAGACAGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGT 17113758
Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704
| ||||| | |||| |||| |||| | | ||| || ||||||||||| || | |
Sbjct 17113757 AAAAAGTGTAGAACAATTAGTTCATAAAGACAACCGTTGTATAGCCATTCATCAACGGAT 17113698
Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764
|| |||||| | || || || || || | ||||||||| | | | |||| | | ||
Sbjct 17113697 GCAGCTTCCTAGATCGGGTAAAAGTGCAAACCAATAGCGACATAAGTAGGAATAATGACA 17113638
Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824
|||||||| || ||||||||||| | ||||| | || || || |||| ||||| |||
Sbjct 17113637 CCAGAAATAATATTGTTTCCGTAAAGAAGAGATCTAGAAACAGGTTCACAAATACCATCA 17113578
Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAAACAGACAGTGGCAGCAAGTAGA 84884
||||| ||| | || || ||| |||||| || || ||| | ||| || | ||
Sbjct 17113577 ATATCTACTAGAGGAACAACAATGAATGCGATAATAAAAACGGAAGTTGCGTTCAATAAG 17113518
Query 84885 GTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGT 84934
|| || |||| | | |||||||| |||| || | |||||| | |||
Sbjct 17113517 GTAGGGATCACTAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGT 17113468
>seq90
Length=4948294
Score = 131 bits (144), Expect = 2e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044
|||||||| || || |||| || ||||| |||||||||||||| ||||||||||
Sbjct 3477187 GGGAAGTTTTGAGCATTACCTTAATGCATAACTTCCATACCAAGGTTAGCACGATTAATA 3477128
Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104
| ||| |||| ||||| | |||||| ||| ||||| || | || ||||| |||
Sbjct 3477127 ATATCAACCCAAGTATTAATAACACGTCATTGACTATCAACTACTGATTGGTTGAAATTA 3477068
Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164
|| ||||| ||||| || || | ||||||| ||| | ||||| ||||||||| |
Sbjct 3477067 AAACCATTTAGATTGAAAGCTACAGTGCTAATACCTAAAGCAGTAAACCAAATATGTATT 3477008
Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACG 84199
|| |||||||| || ||||| || || | | ||||
Sbjct 3477007 ACCGGCCAAGCCGCTAAGAAGAAATGTAAAAAACG 3476973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571272457452800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |